Python Genomics-data Resources

Parsing for messy tables A library for dealing with messy tabular data in several formats, guessing types and detecting headers. See the documentation

pyexcel-xlsx - Let you focus on data, instead of xlsx format pyexcel-xlsx is a tiny wrapper library to read, manipulate and write data in xlsx and xls

Excalibur: A web interface to extract tabular data from PDFs Excalibur is a web interface to extract tabular data from PDFs, written in Python 3! It i

DeepDiff v 5.6.0 DeepDiff Overview DeepDiff: Deep Difference of dictionaries, iterables, strings and other objects. It will recursively look for all t

Welcome to fastcore Python goodies to make your coding faster, easier, and more maintainable Python is a powerful, dynamic language. Rather than bake

Sound Field Analysis toolbox for Python The sound_field_analysis toolbox (short: sfa) is a Python port of the Sound Field Analysis Toolbox (SOFiA) too

charts.css.py charts.css.py provides a python API to convert your 2-dimension data lists into html snippet, which will be rendered into charts by CSS,

Dashboard For The DexConnect Platform of Dexterity Global Working prototype submission for internship at Dexterity Global Group. Dashboard for real ti

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

COVID-19-Greece A python-generated website for visualizing the novel coronavirus (COVID-19) data for Greece. Data sources Data provided by Johns Hopki

Self-Supervised Image Denoising via Iterative Data Refinement Yi Zhang1, Dasong Li1, Ka Lung Law2, Xiaogang Wang1, Hongwei Qin2, Hongsheng Li1 1CUHK-S

EfficientZero (NeurIPS 2021) Open-source codebase for EfficientZero, from "Mastering Atari Games with Limited Data" at NeurIPS 2021. Environments Effi

Passax EDUCATIONAL PURPOSES ONLY Python3 library that can retrieve Chrome-based browser's saved login info. Requirements secretstorage~=3.3.1 pywin32=

UNLIMITED README for the Unlimited game [Mining game] Explore the docs » View Demo · Report Bug · Request Feature Table of Contents About The Project

This is a Python script that given a whole corpus of job descriptions and a file with keywords it extracts the number of number of ocurrences of these keywords and write it to a file. This script it is easy to extend to accept more functionalities

Kodi Oz Weather weather.ozweather Script for Kodi for high quality Australian weather data sourced directly from the BOM. Available from the Kodi offi

Misty2py Misty2py is a Python 3 package for Misty II development using Misty's REST API. Read the full documentation here! Installation Poetry To inst

Imagine by Reasoning: A Reasoning-Based Implicit Semantic Data Augmentation for Long-Tailed Classification (AAAI 2022) Prerequisite PyTorch = 1.2.0 P

Evaluating saliency methods on artificial data with different background types This repository contains the relevant code for the MedNeurips 2021 subm

ScisorWiz: Vizualizer for Differential Isoform Expression README ScisorWiz is a linux-based R-package for visualizing differential isoform expression

Deep Learning Dataset Maker Deep Learning Datasets Maker is a QGIS plugin to make datasets creation easier for raster and vector data. How to use Down

AW-t-SNE The test data, code and result of the AW t-SNE algorithm Structure of the folder Datasets: This folder contains two datasets, the MNIST datas

Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data

No non-sense and no BS repo for how data structure code should be in Python - simple and elegant.

A curated list of references for MLOps

This is a quick-and-dirty tool used to scrape bitcoin/bitcoin pull request and commentary data. Each output/pr number folder contains comments.json:

Gosling.js Gosling.js is a declarative grammar for interactive (epi)genomics visualization on the Web. ⚠️ Please be aware that the grammar of Gosling.

An implementation of the methods presented in Causal-BALD: Deep Bayesian Active Learning of Outcomes to Infer Treatment-Effects from Observational Data.

Unequal-Training-for-Deep-Face-Recognition-with-Long-Tailed-Noisy-Data. This is the code of CVPR 2019 paper《Unequal Training for Deep Face Recognition

Rethinking the Value of Labels for Improving Class-Imbalanced Learning This repository contains the implementation code for paper: Rethinking the Valu

ECRT: Energy-based Causal Representation Transfer Code for Supercharging Imbalanced Data Learning With Energy-basedContrastive Representation Transfer

The Open-Source MLOps Orchestration Framework MLRun is an open-source MLOps framework that offers an integrative approach to managing your machine-lea

ZenML is an extensible, open-source MLOps framework to create production-ready machine learning pipelines. It has a simple, flexible syntax, is cloud and tool agnostic, and has interfaces/abstractions that are catered towards ML workflows.

Flyte Flyte is a workflow automation platform for complex, mission-critical data, and ML processes at scale Home Page · Quick Start · Documentation ·

Pachyderm: The Data Foundation for Machine Learning Pachyderm provides the data layer that allows machine learning teams to productionize and scale th

WebDataset WebDataset is a PyTorch Dataset (IterableDataset) implementation providing efficient access to datasets stored in POSIX tar archives and us

Machine Unlearning Papers 2021 Brophy and Lowd. Machine Unlearning for Random Forests. In ICML 2021. Bourtoule et al. Machine Unlearning. In IEEE Symp

gos is a declarative (epi)genomics visualization library for Python. It is built on top of the Gosling JSON specification, providing a simplified interface for authoring interactive genomic visualizations.

Torch-template-for-deep-learning Pytorch implementations of some **classical backbone CNNs, data enhancement, torch loss, attention, visualization and

垃圾分类模型使用说明 1.包含以下数据文件 文件 描述 data/MaterialMapping.csv 物体以及其归类的信息 data/TestRecords 光谱原始测试数据 CSV 文件 data/TestRecordDesc.zip CSV 文件描述文件 data/Boundaries.cs

Discord_bot A Best and the most easy-to-use Discord bot !! Some simple basic auto moderations, Chat functions. It includes a game similar to Casino, g

dbt-superset-lineage Make dbt docs and Apache Superset talk to one another Why do I need something like this? Odds are rather high that you use dbt to

geneticml This package contains a simple and lightweight genetic algorithm for optimization of any machine learning model. Installation Use pip to ins

KIDA: Knowledge Inheritance in Data Aggregation This project releases our 1st place solution on NeurIPS2021 ML4CO Dual Task. Slide and model weights a

Model Validation Toolkit is a collection of tools to assist with validating machine learning models prior to deploying them to production and monitoring them after deployment to production.

Does-MAML-Only-Work-via-Feature-Re-use-A-Data-Set-Centric-Perspective Does MAML Only Work via Feature Re-use? A Data Set Centric Perspective Installin

audiometry Python scripts for plotting audiograms and related data from Interacoustics Equinox 2.0 audiometer and Otoaccess software. Maybe similar sc

Data Analysis for First Year Laboratory at Imperial College, London. For personal reference only, and to reference in lab reports and lab books.

This is a project of data parallel that running on NLP tasks.

Deep Abstract Networks A PyTorch code implemented for the submission DANets: Deep Abstract Networks for Tabular Data Classification and Regression. Do

EmTract: Extracting Emotions from Social Media Text Tailored for Financial Contexts EmTract is a tool that extracts emotions from social media text. I

A deep learning model for data-driven discovery of functional connectivity https://doi.org/10.3390/a14030075 Usman Mahmood, Zengin Fu, Vince D. Calhou

Voxelized 3D Feature Aggregation for Multiview Detection [arXiv] Multiview 3D object detection on MultiviewC dataset through VFA. Introduction We prop

Adversarial Differentiable Data Augmentation This repository provides the official PyTorch implementation of the ICRA 2021 paper: Adversarial Differen

Termos e acordos Ao iniciar este projeto, você concorda com as diretrizes do Código de Ética e Conduta e do Manual da Pessoa Estudante da Trybe. Boas

bicycle_hiring_app_deployed A data driven app for bicycle hiring in London(UK). It predicts expected number of bicycle hire in London. It asks users t

choropleth_ldn Simple script to create a chloropleth map of London with categorical timeseries data. The script in main.py creates a gif of the most f

Attendance-System-based-on-Facial-recognition-Attendance-data-stored-in-csv-file- Simple Python project using Opencv and datetime package to recognise

subgraph-extractor Extracts data from the database for a graph-node and stores it in parquet files Installation For developing, it's recommended to us

OpenStreetMap To Sandbox This is a script to download data from OSM API and upload it to the mapping sandbox. Note that it clears all data in the sand

geneticml This package contains a simple and lightweight genetic algorithm for optimization of any machine learning model. Installation Use pip to ins

PyCellID (building...) Functions to analyze Cell-ID single-cell cytometry data using python language. Dependecies for this project. attrs(=21.1.0) fo

Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python Cashier is a tool developed by Russell Durrett for the analysis and extr

Neuroanalysis Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology. Functions for runnin

rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

Binary-Tree Tugas kelompok Struktur Data Silahkan jika ingin mengubah tipe data pada operasi binary tree *Boleh juga semua program kelompok bisa disat

when-data This contains timezone mapping information for when preprocessed from the geonames data. It exists in a separate repository so that one does

Gauchian: WGS-based GBA variant caller Gauchian is a targeted variant caller for the GBA gene based on a whole-genome sequencing (WGS) BAM file. Gauch

Image-Exif A Python script for extracting exif metadata from images. How to use? Using this script you can extract exif data from image and save in .c

BitwardenDecryptBrute This is a slightly modified version of BitwardenDecrypt. In addition to the decryption this version can do wordlist attacks for

ML-and-DataScience-preparation This repository has the goal to create a learning and preparation roadMap for Machine Learning Engineers and Data Scien

Viz-It Data Visualizer Web-Application If I ask you where most of the data wrangler looses their time ? It is Data Overview and EDA. Presenting "Viz-I

Using Streaming Twitter Data with Kafka and Spark Reading streams of Twitter data, publishing them to Kafka topic, process message using Kafka Stream

Screenshot OCR Tool Extracting data from screen time screenshots in iOS and Android. We are exploring 3 options: Simple OCR with no text position usin

Scrambler App This collection of tools that makes it easy to secure and/or obfuscate messages, files, and data. It leverages encryption tools such as

Workforce Scripts A set of Python scripts and notebooks to help administer and configure Workforce projects. Notebooks Several example Jupyter noteboo

autarquicas - local elections in Portugal Repo with data from local elections in Portugal from 2009 to 2013 Objective To provide, to all, raw data fro

DeepIntegralCompton Deep Learning applied to Integral data analysis Module installation Move to the root directory of the project and execute : pip in

Binance Kline Data by seunghan(gingerthorp) reference https://github.com/binance/binance-public-data/ All intervals are supported: 1m, 3m, 5m, 15m, 30

HTSeq DEVS: https://github.com/htseq/htseq DOCS: https://htseq.readthedocs.io A Python library to facilitate programmatic analysis of data from high-t

sklearn-evaluation Machine learning model evaluation made easy: plots, tables, HTML reports, experiment tracking, and Jupyter notebook analysis. Suppo

Imaging Transcriptomics Imaging transcriptomics is a methodology that allows to identify patterns of correlation between gene expression and some prop

DataGenerator Made with Python Open for pull requests 1. Dependencies To install required dependencies run pip install -r requirements.txt 2. Executi

Contribute in this repository and help other students with their assignment by adding python scripts for various management system programs.

Learning Motion Priors for 4D Human Body Capture in 3D Scenes (LEMO) Official Pytorch implementation for 2021 ICCV (oral) paper "Learning Motion Prior

BigScience Data Sourcing Code This directory gathers the tools developed by the Data Sourcing Working Group First Sourcing Sprint: October 2021 The co

Audnexus.bundle An audnex.us client, providing rich author and audiobook data to Plex via it's legacy plugin agent system. 📝 Table of Contents About

NLP-Pytorch-Assignment An assignment from my grad-level data mining course (before I started personal projects) demonstrating some experience with NLP

Overview dataflow-mvp provides a basic example pipeline that pulls data from an API and writes it to a BigQuery table using GCP's Dataflow (i.e., Apac

Starlink Python A Python library for loading data from a SpaceX Starlink satellite. The goal is to be a simple interface for Starlink. It builds upon

plotly_resampler enables visualizing large sequential data by adding resampling functionality to Plotly figures. In this Plotly-Resampler demo over 11

Rainbow 🌈 An implementation of Rainbow DQN which reaches a median HNS of 205.7 after only 10M frames (the original Rainbow from Hessel et al. 2017 re

Randomisation-based inference in Python based on data resampling and permutation.

nfl_data_py nfl_data_py is a Python library for interacting with NFL data sourced from nflfastR, nfldata, dynastyprocess, and Draft Scout. Includes im

covid19-voice-assistant voice assistant made with python that search for covid19 data(like total cases, deaths and etc) in a specific country installi

A simple API for working with University of California, Irvine (UCI) Machine Learning (ML) repository Table of Contents Introduction About Page of the

Curve Sorry to tell contributors and users. We decided to archive the project temporarily due to the employee work plan of collaborators. There are no

CLIP-Indonesian CLIP (Radford et al., 2021) is a multimodal model that can connect images and text by training a vision encoder and a text encoder joi

pyT PyT is a a command line tool and as well a library for visualising various data formats like: JSON HTML Table CSV XML, etc. Features Print table o