Python Medical-knowledge-graph Resources

Enhancing Knowledge Tracing via Adversarial Training This repository contains source code for the paper "Enhancing Knowledge Tracing via Adversarial T

UltraGCN This is our Pytorch implementation for our CIKM 2021 paper: Kelong Mao, Jieming Zhu, Xi Xiao, Biao Lu, Zhaowei Wang, Xiuqiang He. UltraGCN: A

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

GBK-GNN: Gated Bi-Kernel Graph Neural Networks for Modeling Both Homophily and Heterophily Abstract Graph Neural Networks (GNNs) are widely used on a

Digital Twin Mobility Profiling: A Spatio-Temporal Graph Learning Approach This is the implementation of traffic prediction code in DTMP based on PyTo

stock-graph-python Simple GUI python app to show a stocks graph performance. Made with Matplotlib and Tiingo. Tiingo API Key You will need to add your

CKDN The official implementation of the ICCV2021 paper "Learning Conditional Knowledge Distillation for Degraded-Reference Image Quality Assessment" O

Fast and Easy-to-use Distributed Graph Learning for PyTorch Geometric

Ansible Playbook Grapher ansible-playbook-grapher is a command line tool to create a graph representing your Ansible playbook plays, tasks and roles.

Graph Regularized Residual Subspace Clustering Network for hyperspectral image clustering

Heterogeneous Temporal Graph Neural Network This repository contains the datasets and source code of HTGNN. run_mag.ipynb is the training and testing

ConE: Cone Embeddings for Multi-Hop Reasoning over Knowledge Graphs This is the code of paper ConE: Cone Embeddings for Multi-Hop Reasoning over Knowl

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

Learning Graph Cellular Automata This code implements the experiments from the NeurIPS 2021 paper: "Learning Graph Cellular Automata" Daniele Grattaro

MosaicKD Code for NeurIPS-21 paper "Mosaicking to Distill: Knowledge Distillation from Out-of-Domain Data" 1. Motivation Natural images share common l

BMVC 2021 BI-GConv: Boundary-Aware Input-Dependent Graph Convolution for Biomedical Image Segmentation Necassary Dependencies: PyTorch 1.2.0 Python 3.

VACA Code repository for the paper "VACA: Designing Variational Graph Autoencoders for Interventional and Counterfactual Queries (arXiv)". The impleme

Rot-Pro : Modeling Transitivity by Projection in Knowledge Graph Embedding This repository contains the source code for the Rot-Pro model, presented a

Node Dependent Local Smoothing for Scalable Graph Learning Requirements Environments: Xeon Gold 5120 (CPU), 384GB(RAM), TITAN RTX (GPU), Ubuntu 16.04

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

SparseCard Code for approximate graph reduction techniques for cardinality-based DSFM, from paper "Approximate Decomposable Submodular Function Minimi

Implementation for On Provable Benefits of Depth in Training Graph Convolutional Networks Setup This implementation is based on PyTorch = 1.0.0. Smal

SMORE: Knowledge Graph Completion and Multi-hop Reasoning in Massive Knowledge Graphs SMORE is a a versatile framework that scales multi-hop query emb

Hierarchical User Intent Graph Network for Multimedia Recommendation This is our Pytorch implementation for the paper: Hierarchical User Intent Graph

MosaicKD Code for NeurIPS-21 paper "Mosaicking to Distill: Knowledge Distillation from Out-of-Domain Data" 1. Motivation Natural images share common l

Video Matting via Consistency-Regularized Graph Neural Networks Project Page | Real Data | Paper Installation Our code has been tested on Python 3.7,

ConE: Cone Embeddings for Multi-Hop Reasoning over Knowledge Graphs This is the code of paper ConE: Cone Embeddings for Multi-Hop Reasoning over Knowl

Predicting lncRNA–protein interactions based on graph autoencoders and collaborative training Code for our paper "Predicting lncRNA–protein interactio

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

Nested Graph Neural Networks About Nested Graph Neural Network (NGNN) is a general framework to improve a base GNN's expressive power and performance.

Exponential Graph is Provably Efficient for Decentralized Deep Training This code repository is for the paper Exponential Graph is Provably Efficient

The HIST framework for stock trend forecasting The implementation of the paper "HIST: A Graph-based Framework for Stock Trend Forecasting via Mining C

Implementation for the paper: Probabilistic Entity Representation Model for Reasoning over Knowledge Graphs, Nurendra Choudhary, Nikhil Rao, Sumeet Ka

Unified Instance and Knowledge Alignment Pretraining for Aspect-based Sentiment Analysis Requirements python 3.7 pytorch-gpu 1.7 numpy 1.19.4 pytorch_

light-weight-depth-estimation Boosting Light-Weight Depth Estimation Via Knowledge Distillation, https://arxiv.org/abs/2105.06143 Junjie Hu, Chenyou F

The HIST framework for stock trend forecasting The implementation of the paper "HIST: A Graph-based Framework for Stock Trend Forecasting via Mining C

Directed Graph Contrastive Learning The PyTorch implementation of Directed Graph Contrastive Learning (DiGCL). In this paper, we present the first con

A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

Word Counter By EBUS Coding Club Count the frequency of letters or words in a text file and show a graph. Requirements Python 3.9 or higher matplotlib

DPGNN This repository is an official PyTorch(Geometric) implementation of DPGNN(DPGCN) in "Distance-wise Prototypical Graph Neural Network for Node Im

DyGED Dynamic Graph Event Detection Get Started pip install -r requirements.txt TODO Paper link to arxiv, and how to cite. Twitter Weather dataset tra

HMemNetworks Code and documentation for Harmonic Memory Networks, a series of models for compositionally assembling representations of graph elements

Random-walk Embedding Framework This repository is a reference implementation of the random-walk embedding framework as described in the paper: A Broa

CoVA: Context-aware Visual Attention for Webpage Information Extraction Abstract Webpage information extraction (WIE) is an important step to create k

SSKT(Accepted WACV2022) Concept map Dataset Image dataset CIFAR10 (torchvision) CIFAR100 (torchvision) STL10 (torchvision) Pascal VOC (torchvision) Im

Rce-KGQA A novel pipeline framework for multi-hop complex KGQA task. This framework mainly contains two modules, answering_filtering_module and relati

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

MRefG Wanli Li and Tieyun Qian: "Exploit a Multi-head Reference Graph for Semi-supervised Relation Extraction", IJCNN 2021 1. Requirements To reproduc

Neo4j Movies Application: Quick Start This example application demonstrates how easy it is to get started with Neo4j in Python. It is a very simple we

MCGC Description This is the code of "Multi-view Contrastive Graph Clustering" in NeurlPS 2021. Datasets Results ACM DBLP IMDB Amazon photos Amazon co

Djag Scheduler (Dj)ango Task D(AG) (Scheduler) Overview Djag scheduler associates scheduling information with celery tasks The task schedule is persis

Minesweeper-AI Created as part of CS50 AI's coursework. This AI makes use of knowledge entailment to calculate the best probabilities to win Minesweep

Spatial-Temporal Transformer for Dynamic Scene Graph Generation Pytorch Implementation of our paper Spatial-Temporal Transformer for Dynamic Scene Gra

graph_SSL Self-supervised learning on Graph Representation Learning (node-level task) How to run the code To run GRACE, sh run_GRACE.sh To run GCA, sh

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

Key Information Extraction from Scanned Invoices Key information extraction from invoice document with Graph Convolution Network Related blog post fro

Blog focused on skills enhancement and knowledge sharing. Tech Stack's: Vue.js, Django and Django-Ninja

ST This is the code of NeurIPS 2021 paper "Towards Enabling Meta-Learning from Target Models". If you use any content of this repo for your work, plea

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

Resilient UAV Swarm Communications with Graph Convolutional Neural Network This repository contains the source codes of Resilient UAV Swarm Communicat

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Neural Lexicon Reader: Reduce Pronunciation Errors in End-to-end TTS by Leveraging External Textual Knowledge This is an implementation of the paper,

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

LMSOC: An Approach for Socially Sensitive Pretraining Code for reproducing the paper LMSOC: An Approach for Socially Sensitive Pretraining to appear a

KoPL: 面向知识的推理问答编程语言 安装 | 快速开始 | 文档 KoPL全称 Knowledge oriented Programing Language, 是一个为复杂推理问答而设计的编程语言。我们可以将自然语言问题表示为由基本函数组合而成的KoPL程序，程序运行的结果就是问题的答案。目前，

KnowPrompt Code and datasets for our paper "KnowPrompt: Knowledge-aware Prompt-tuning with Synergistic Optimization for Relation Extraction" Requireme

Learn Continually, Generalize Rapidly: Lifelong Knowledge Accumulation for Few-shot Learning This repo is for Findings at EMNLP 2021 paper: Learn Cont

stock-graph-python Simple CLI python app to show a stocks graph performance. Made with Matplotlib and Tiingo. Tiingo API Key You will need to add your

What is Retentioneering? Retentioneering is a Python framework and library to assist product analysts and marketing analysts as it makes it easier to

Code for the paper "PICK: Processing Key Information Extraction from Documents using Improved Graph Learning-Convolutional Networks" (ICPR 2020)

Graph Mining Author: Jiayi Chen Time: April 2021 Implemented Algorithms: Network: Scrabing Data, Network Construbtion and Network Measurement (e.g., P

Material de demonstração dos serviços: Watson Natural Language Understanding e Knowledge Studio Visão Geral: https://www.ibm.com/br-pt/cloud/watson-na

Scene Graph Benchmark in PyTorch 1.7 This project is based on maskrcnn-benchmark Highlights Upgrad to pytorch 1.7 Multi-GPU training and inference Bat

PLOME:Pre-training with Misspelled Knowledge for Chinese Spelling Correction (ACL2021) This repository provides the code and data of the work in ACL20

Introduction MutualGuide is a compact object detector specially designed for embedded devices. Comparing to existing detectors, this repo contains two

Neural Lexicon Reader: Reduce Pronunciation Errors in End-to-end TTS by Leveraging External Textual Knowledge This is an implementation of the paper,

HRKD: Hierarchical Relational Knowledge Distillation for Cross-domain Language Model Compression This repository contains the code for the paper in EM

Dataset Knowledge Transfer for Class-Incremental Learning Without Memory [Paper] [Slides] Summary Introduction Installation Reproducing results Citati

MTDM Temporal Knowledge Graph Reasoning Triggered by Memories To alleviate the time dependence, we propose a memory-triggered decision-making (MTDM) n

MIA GNN Project Starter If you meet the version mismatch error for Lasagne library, please use following command to upgrade Lasagne library. pip insta

CoraNet This is the 3D Implementation of 《Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation》 Environment pytor

Edge Rewiring Goes Neural: Boosting Network Resilience via Policy Gradient This repository is the official PyTorch implementation of "Edge Rewiring Go

Graph2SMILES A graph-to-sequence model for one-step retrosynthesis and reaction outcome prediction. 1. Environmental setup System requirements Ubuntu:

Learning to Learn Graph Topologies This is the official code of L2G, Unrolling and Recurrent Unrolling in Learning to Learn Graph Topologies. Requirem

VLG-Net: Video-Language Graph Matching Networks for Video Grounding Introduction Official repository for VLG-Net: Video-Language Graph Matching Networ

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

FairGo WWW2021 Learning Fair Representations for Recommendation: A Graph-based Perspective As a key application of artificial intelligence, recommende

FairGNN A PyTorch implementation of "Say No to the Discrimination: Learning Fair Graph Neural Networks with Limited Sensitive Attribute Information" (

Dependencies NOTE: This code has been updated, if you were using this repo earlier and experienced issues that was due to an outaded codebase. Please

Reinforcement Knowledge Graph Reasoning for Explainable Recommendation This repository contains the source code of the SIGIR 2019 paper "Reinforcement

Jointly Learning Explainable Rules for Recommendation with Knowledge Graph

Accuracy-Diversity Trade-off in Recommender Systems via Graph Convolutions This repository contains the code of the paper "Accuracy-Diversity Trade-of

DGCN This is the official implementation of our WWW'21 paper: Yu Zheng, Chen Gao, Liang Chen, Depeng Jin, Yong Li, DGCN: Diversified Recommendation wi

DMBGN: Deep Multi-Behaviors Graph Networks for Voucher Redemption Rate Prediction The implementation of the accepted paper "Deep Multi-Behaviors Graph

GHCF This is our implementation of the paper: Chong Chen, Weizhi Ma, Min Zhang, Zhaowei Wang, Xiuqiang He, Chenyang Wang, Yiqun Liu and Shaoping Ma. 2

HeroGRAPH Code for my ORSUM @ RecSys 2020, HeroGRAPH: A Heterogeneous Graph Framework for Multi-Target Cross-Domain Recommendation Paper, workshop pro

Bi-TGCF Tensorflow Implementation of BiTGCF： Cross Domain Recommendation via Bi-directional Transfer Graph Collaborative Filtering Networks. in CIKM20

hierarchical_fashion_graph_network This is our Tensorflow implementation for the paper: Xingchen Li, Xiang Wang, Xiangnan He, Long Chen, Jun Xiao, and