Python Medical-knowledge-graph Resources

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

LeViT_UNet For medical image segmentation Our model is based on LeViT (https://github.com/facebookresearch/LeViT). You'd better gitclone its codes. Th

TransFuse This repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Requirements Pytorch=1.6.0, 1.9.0 (=1.

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Medical Data for Machine Learning This is a curated list of medical data for machine learning. This list is provided for informational purposes only,

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

GPU implementation of kNN and SNN GPU implementation of $k$-Nearest Neighbors and Shared-Nearest Neighbors Supported by numba cuda and faiss library E

HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images Histological Image Segmentation This

TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the computational graph.

SI_EXPLAINER_tg_bot This bot is an assistant for medical professionals in interpreting the results of patient clustering. ABOUT This chatbot was devel

Language Models as Zero-Shot Planners: Extracting Actionable Knowledge for Embodied Agents [Project Page] [Paper] [Video] Wenlong Huang1, Pieter Abbee

ECLARE ECLARE: Extreme Classification with Label Graph Correlations @InProceedings{Mittal21b, author = "Mittal, A. and Sachdeva, N. and Agrawal

GalaXC GalaXC: Graph Neural Networks with Labelwise Attention for Extreme Classification @InProceedings{Saini21, author = {Saini, D. and Jain,

The goal of the exercises below is to evaluate the candidate knowledge and problem solving expertise regarding the main development focuses for the iFood ML Platform team: MLOps and Feature Store development.

必要なソフト・パッケージ Python3 Numpy JSON Matplotlib 動作確認環境 MacBook Air M1 Python 3.8.2 (arm64) Numpy 1.22.0 Matplotlib 3.5.1 JSON 2.0.9 使い方 draw_time_histgram(

MedViLL This repository provides the code for MedViLL(Medical Vision Language Learner). Our proposed architecture MedViLL is a single BERT-based model

GraphMLTutorialNLDL22 Tutorial NLDL22: Introduction to Graph Machine Learning, with Jupyter notebooks This tutorial takes place during the conference

Scene Graph Generation from Natural Language Supervision This repository includes the Pytorch code for our paper "Learning to Generate Scene Graph fro

Collaborative Knowledge Distillation for Heterogeneous Information Network Embed

UnifiedSKG 📚 : Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Models Code for paper UnifiedSKG: Unifying and Mu

Pytorch Implementation of Learning Mesh-based Simulation With Graph Networks This is the unofficial implementation of the approach described in the pa

NLP PubMed Medical Research Paper Abstract (Randomized Controlled Trial) A natural language processing model for sequential sentence classification in

Node-level Graph Regression with Deep Gaussian Process Models Prerequests our implementation is mainly based on tensorflow 1.x and gpflow 1.x: python

FairEdit Relevent Publication FairEdit: Preserving Fairness in Graph Neural Networks through Greedy Graph Editing

TBSG: Tree-based Search Graph for Approximate Nearest Neighbor Search. TBSG is a graph-based algorithm for ANNS based on Cover Tree, which is also an

DeepKE is a knowledge extraction toolkit supporting low-resource and document-level scenarios for entity, relation and attribute extraction. We provide comprehensive documents, Google Colab tutorials, and online demo for beginners.

SimReg: A Simple Regression Based Framework for Self-supervised Knowledge Distillation Source code for the paper "SimReg: Regression as a Simple Yet E

1 MAGNN This repo is the official implementation for Multi-Scale Adaptive Graph Neural Network for Multivariate Time Series Forecasting. 1.1 The frame

VisionKG: Vision Knowledge Graph Official Repository of VisionKG by Anh Le-Tuan, Trung-Kien Tran, Manh Nguyen-Duc, Jicheng Yuan, Manfred Hauswirth and

PPGNet: Learning Point-Pair Graph for Line Segment Detection PyTorch implementation of our CVPR 2019 paper: PPGNet: Learning Point-Pair Graph for Line

TransferNet: Learning Transferrable Knowledge for Semantic Segmentation with Deep Convolutional Neural Network Created by Seunghoon Hong, Junhyuk Oh,

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind

Dynamic Stock Industrial Classification Use graph-based analysis to re-classify stocks and experiment different re-classification methodologies to imp

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Introduction This repository contains the PyTorch implem

Dagon - An Asynchronous Task Graph Execution Engine Dagon is a job execution sys

Simple implementation of Equivariant GNN A short implementation of E(n) Equivariant Graph Neural Networks for HOMO energy prediction. Just 50 lines of

This is the course project of AI3602: Data Mining of SJTU. Group Members include Jinghao Feng, Mingyang Jiang and Wenzhong Zheng.

Table of Contents Introduction Installation Examples Pre-trained models Quick start using colab JARVIS-ALIGNN webapp Peformances on a few datasets Use

Graph-to-3D This is the official implementation of the paper Graph-to-3d: End-to-End Generation and Manipulation of 3D Scenes Using Scene Graphs | arx

merlot_reserve Code release for "MERLOT Reserve: Neural Script Knowledge through Vision and Language and Sound" MERLOT Reserve (in submission) is a mo

ReceptiveFieldAnalysisToolbox This is RFA-Toolbox, a simple and easy-to-use library that allows you to optimize your neural network architectures usin

Intel® Neural Compressor targeting to provide unified APIs for network compression technologies, such as low precision quantization, sparsity, pruning, knowledge distillation, across different deep learning frameworks to pursue optimal inference performance.

Graph-based CTR prediction This is a repository designed for graph-based CTR prediction methods, it includes our graph-based CTR prediction methods: F

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

Security audit Python project dependencies against security advisory databases.

Knowledge Informed Machine Learning using a Weibull-based Loss Function Exploring the concept of knowledge-informed machine learning with the use of a

Introduction This is an implementation of our paper Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis.

PYGON A Graph Neural Network Tool for Recovering Dense Sub-graphs in Random Dense Graphs. Installation This code requires to install and run the graph

Repository for papers: Benchmark: Effect of Prior-based Losses on Segmentation Performance: A Benchmark Midl: A Surprisingly Effective Perimeter-based

Intro Real-time object detection and classification. Paper: version 1, version 2. Read more about YOLO (in darknet) and download weight files here. In

GraphFPN: Graph Feature Pyramid Network for Object Detection Download graph-FPN-main.zip For training , run: python train.py For test with Graph_fpn

FlatGCN This is the official Pytorch-version code of FlatGCN (Flattened Graph Convolutional Networks for Recommendation, submitted to ICASSP2022). Req

This application aims to read all wifi passwords and visualizes the complexity in graph formation by taking into account several criteria and help you generate new random passwords.

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

Distilling-the-Knowledge-in-a-Neural-Network This is an implementation of a part of the paper "Distilling the Knowledge in a Neural Network" (https://

Distilling-the-knowledge-in-neural-network Teaches a student network from the knowledge obtained via training of a larger teacher network This is an i

Medical Appointments No-shows Why do 20% of patients miss their scheduled appointments? A person makes a doctor appointment, receives all the instruct

GAT - Graph Attention Network (PyTorch) 💻 + graphs + 📣 = ❤️ This repo contains a PyTorch implementation of the original GAT paper ( 🔗 Veličković et

Skeletal-GNN Code for "Learning Skeletal Graph Neural Networks for Hard 3D Pose Estimation" ICCV'21 Various deep learning techniques have been propose

Spatio-Temporal Dynamic Inference Network for Group Activity Recognition The source codes for ICCV2021 Paper: Spatio-Temporal Dynamic Inference Networ

Scene Graph Generation Object Detections Ground truth Scene Graph Generated Scene Graph In this visualization, woman sitting on rock is a zero-shot tr

Documentation | Paper [JMLR] | Tutorials | Benchmarks | Examples DIG: Dive into Graphs is a turnkey library for graph deep learning research. Why DIG?

HKDnet Paper Title: "Heterogeneous Knowledge Distillation for Simultaneous Infrared-Visible Image Fusion and Super-Resolution" Email: 18186470991@163.

Chinese Medical Entity Recognition Based on BERT+Bi-LSTM+CRF Step 1 I share the dataset on my google drive, please download the whole 'CCKS_2019_Task1

Introduction This is a crawler I wrote in Python using the APIs of Telethon months ago. This tool was not intended to be publicly available for a numb

Predico Disease Prediction system based on symptoms provided by patient- using Python-Django & Machine Learning

d o t m o t i f Find graph motifs using intuitive notation DotMotif is a library that identifies subgraphs or motifs in a large graph. It looks like t

Knowledge Repo The Knowledge Repo project is focused on facilitating the sharing of knowledge between data scientists and other technical roles using

Multi-level Disentanglement Graph Neural Network (MD-GNN) This is a PyTorch implementation of the MD-GNN, and the code includes the following modules:

✔️ Linux ✔️ OS X ❌ Windows (#39) Welcome to graph-app-kit Turn your graph data into a secure and interactive visual graph app in 15 minutes! Why This

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

mask-uncertainty-in-HSI This repository contains the testing code and pre-trained models for the paper Calibrated Hyperspectral Image Reconstruction v

Fast-Partial-Ranking-MNL This repo provides a PyTorch implementation for the CopulaGNN models as described in the following paper: Fast Learning of MN

cluster-link-prediction This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Predict

Mammoth - An Extendible (General) Continual Learning Framework for Pytorch NEWS STAY TUNED: We are working on an update of this repository to include

Glyth Graph Revision for 0.01 A simple, yet versatile, package for graphing equations on a 2-dimensional text canvas List of contents: Brief Introduct

A collection of graph classification methods, covering embedding, deep learning, graph kernel and factorization papers

Medical-Insurance-Cost-Prediction-using-Machine-learning - Here in this project, I will use regression analysis to predict medical insurance cost for people in different regions, and based on several aspects like : Smoking, Number of children, BMI...etc.

Total number of Spanning Trees in a Graph This is a python script just written f

Pure Python web server - PyProject A blogging platform written in pure python (n

Pytorch implementation of paper Semi-supervised Knowledge Transfer for Deep Learning from Private Training Data

Strongly local p-norm-cut algorithms for semi-supervised learning and local graph clustering

Confidence-based Graph Convolutional Networks for Semi-Supervised Learning Source code for AISTATS 2019 paper: Confidence-based Graph Convolutional Ne

Neural Structured Learning in TensorFlow Neural Structured Learning (NSL) is a new learning paradigm to train neural networks by leveraging structured

Graph-based joint model with Nonignorable Missingness (GNM) This is a Keras implementation of the GNM model in paper ’Graph-Based Semi-Supervised Lear

G3NN This repo provides a pytorch implementation for the 4 instantiations of the flexible generative framework as described in the following paper: A

Graph Contrastive Learning with Augmentations PyTorch implementation for Graph Contrastive Learning with Augmentations [poster] [appendix] Yuning You*

CCGL: Contrastive Cascade Graph Learning This repo provides a reference implementation of Contrastive Cascade Graph Learning (CCGL) framework as descr

GitHub Activity Generator A script that helps you instantly generate a beautiful GitHub Contributions Graph for the last year. Before 😐 😶 😒 After ?

GCC: Graph Contrastive Coding for Graph Neural Network Pre-Training Original implementation for paper GCC: Graph Contrastive Coding for Graph Neural N

GRACE The official PyTorch implementation of deep GRAph Contrastive rEpresentation learning (GRACE). For a thorough resource collection of self-superv

GMI (Graphical Mutual Information) Graph Representation Learning via Graphical Mutual Information Maximization (Peng Z, Huang W, Luo M, et al., WWW 20

SelfGNN A PyTorch implementation of "SelfGNN: Self-supervised Graph Neural Networks without explicit negative sampling" paper, which will appear in Th

Pretraining on Dynamic Graph Neural Networks Our article is PT-DGNN and the code is modified based on GPT-GNN Requirements python 3.6 Ubuntu 18.04.5 L

DGI Deep Graph Infomax (Veličković et al., ICLR 2019): https://arxiv.org/abs/1809.10341 Overview Here we provide an implementation of Deep Graph Infom

Unsupervised Attributed Multiplex Network Embedding (DMGI) Overview Nodes in a multiplex network are connected by multiple types of relations. However