Python Medical-knowledge-graph Resources

ChebLieNet: Invariant spectral graph NNs turned equivariant by Riemannian geometry on Lie groups Hugo Aguettaz, Erik J. Bekkers, Michaël Defferrard We

EvDistill: Asynchronous Events to End-task Learning via Bidirectional Reconstruction-guided Cross-modal Knowledge Distillation (CVPR'21) Citation If y

Dynamic-Graphs-Construction Official Codes for Graph Modularity:Towards Understanding the Cross-Layer Transition of Feature Representations in Deep Ne

2s-AGCN Two-Stream Adaptive Graph Convolutional Networks for Skeleton-Based Action Recognition in CVPR19 Note PyTorch version should be 0.3! For PyTor

5ePy is an experimental project I'm undertaking for the sole purpose of increasing my Python knowledge. #Goals Goal: Create a working, albeit lightwei

Fine-grained Sentiment Analysis as Dependency Graph Parsing This repository contains the code and datasets described in following paper: Fine-grained

SwisE Switch spaces for knowledge graph embeddings. Requirements: python3 pytorch numpy tqdm Reproduce the results To reproduce the reported results,

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

Fasterai fasterai is a library created to make neural network smaller and faster. It essentially relies on common compression techniques for networks

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Graph Convolutional Gated Recurrent Neural Network (GCGRNN) Improved from Graph Convolutional Neural Networks with Data-driven Graph Filter (GCNN-DDGF

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

FGD Paper: Focal and Global Knowledge Distillation for Detectors Install MMDetection and MS COCO2017 Our codes are based on MMDetection. Please follow

Awesome Streamlit The fastest way to build Awesome Tools and Apps! Powered by Python! The purpose of this project is to share knowledge on how Awesome

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

Overview of OpenPNM OpenPNM is a comprehensive framework for performing pore network simulations of porous materials. More Information For more detail

DA2Lite (Deep Architecture to Lite) is a toolkit to compress and accelerate deep network models. ⭐ Star us on GitHub — it helps!! Frameworks & Librari

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

SegDistill: Toolbox for Knowledge Distillation on Semantic Segmentation Networks This repo contains the supported code and configuration files for Seg

Pigment The problem of partitioning up a skincare regime into parts such that each part does not interfere with itself is equivalent to the minimal cl

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Code has been run on Google Colab, thanks Google for providing computational resources Contents Natural Language Processing（自然语言处理） Text Classificati

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

Ohm-s-Law-Visualizer It's an application to calculate I from v and r using Ohm's Law. It can also plot a graph between V vs I. Story I'm doing my Unde

Implementing Graph Convolutional Networks and Information Retrieval Mechanisms using pure Python and NumPy

GN-Transformer AST This is the official repository for the paper "GN-Transformer: Fusing AST and Source Code information in Graph Networks". Data Prep

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

GemNet: Universal Directional Graph Neural Networks for Molecules Reference implementation in PyTorch of the geometric message passing neural network

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf

TensorFlow GNN This is an early (alpha) release to get community feedback. It's under active development and we may break API compatibility in the fut

GNet-pose Project Page: http://guanghan.info/projects/guided-fractal/ UPDATE 9/27/2018: Prototxts and model that achieved 93.9Pck on LSP dataset. http

Some tentative models that incorporate label propagation to graph neural networks for graph representation learning in nodes, links or graphs.

Housegan-data-reader House-GAN++ (data-reader) Code and instructions for converting rplan dataset (raster images) to housegan++ data format. House-GAN

Graph Nets library Graph Nets is DeepMind's library for building graph networks in Tensorflow and Sonnet. Contact [email protected] for comments a

CG3 This is the repository for the AAAI 21 paper [Contrastive and Generative Graph Convolutional Networks for Graph-based Semi-Supervised Learning]. R

Open-KG-canonicalization The software associated with a paper accepted at EMNLP 2021 titled "Open Knowledge Graphs Canonicalization using Variational

Time2box Implementation of [Time in a Box: Advancing Knowledge Graph Completion with Temporal Scopes].

Robust and Accurate Object Detection via Self-Knowledge Distillation paper:https://arxiv.org/abs/2111.07239 Environments Python 3.7 Cuda 10.1 Prepare

Zero-Shot Learning in Named Entity Recognition with Common Sense Knowledge Associated code for the paper Zero-Shot Learning in Named Entity Recognitio

HaloGraphNet Predict halo masses from simulations via Graph Neural Networks. Given a dark matter halo and its galaxies, creates a graph with informati

Interpreting Language Models Through Knowledge Graph Extraction Idea: How do we interpret what a language model learns at various stages of training?

Knowledge Base Completion Meets Transfer Learning This code accompanies the paper Knowledge Base Completion Meets Transfer Learning published at EMNLP

EZ-Graph EZ Graph is a GUI that allows users to make and train neural networks without writing a single line of code. Requirements python 3 pandas num

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

GATER This repository contains the code for our EMNLP 2021 paper “Heterogeneous Graph Neural Networks for Keyphrase Generation”. Our implementation is

GraphWar: Arms Race in Graph Adversarial Learning NOTE: GraphWar is still in the early stages and the API will likely continue to change. 🚀 Installat

GOAT A paper using optimal transport to solve the graph matching problem. https://arxiv.org/abs/2111.05366 Repo structure .github: Files specifying ho

isvd Official implementation of NeurIPS'21: Implicit SVD for Graph Representation Learning If you find this code useful, you may cite us as: @inprocee

Climate Modeling with Neural Diffusion Equation Introduction This is the repository of our accepted ICDM 2021 paper "Climate Modeling with Neural Diff

This is a sport analytics project that combines the knowledge of Object Oriented Programming (OOP) and Webscraping, the weekly scraping of the English Premier league table is carried out to assess the performance of each club from the beginning of the season to the end.

Trans-Net Code for (Visual Boundary Knowledge Translation for Foreground Segmentation, AAAI2021). [https://ojs.aaai.org/index.php/AAAI/article/view/16

SGTL - Spectral Graph Theory Library SGTL is a python library of spectral graph theory methods. The library is still very new and so there are many fe

ICS-Visualizer is an interactive Industrial Control Systems (ICS) network graph that contains up-to-date ICS metadata (Name, company, port, user manua

Overview Metrinome is an all-purpose tool for working with code complexity metrics. It can be used as both a REPL and API, and includes: Converters to

Py2neo Py2neo is a client library and toolkit for working with Neo4j from within Python applications. The library supports both Bolt and HTTP and prov

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

Cold Brew: Distilling Graph Node Representations with Incomplete or Missing Neighborhoods Introduction Graph Neural Networks (GNNs) have demonstrated

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv

Homepage | Paper | Datasets | Leaderboard | Documentation Graph Robustness Benchmark (GRB) provides scalable, unified, modular, and reproducible evalu

Entity-Based Knowledge Conflicts in Question Answering Run Instructions | Paper | Citation | License This repository provides the Substitution Framewo

Polypharmacy - DDI - Synergy Survey The Survey Paper This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polyp

Instance-conditional Knowledge Distillation for Object Detection This is a MegEngine implementation of the paper "Instance-conditional Knowledge Disti

GDN A tensorflow=1.13 implementation of Deconvolutional Networks on Graph Data (NeurIPS 2021) Abstract In this paper, we consider an inverse problem i

SGMNet Implementation PyTorch implementation of SGMNet for ICCV'21 paper "Learning to Match Features with Seeded Graph Matching Network", by Hongkai C

Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using

Knowledgeable Prompt-tuning: Incorporating Knowledge into Prompt Verbalizer for Text Classification

Towards Continual Knowledge Learning of Language Models This is the official github repository for Towards Continual Knowledge Learning of Language Mo

Adversarial Attacks on Knowledge Graph Embeddings via Instance Attribution Methods This is the code repository to accompany the EMNLP 2021 paper on ad

Geometric Graphs Generate knowledge graphs with interesting geometries, like lattices. Works on Python 3.9+ because it uses cool new features. Get out

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

CaGCN This repo is for source code of NeurIPS 2021 paper "Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration". Paper L

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or

Polypharmacy - DDI - Synergy Survey The Survey Paper This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polyp

ADGCL : Adversarial Graph Augmentation to Improve Graph Contrastive Learning Introduction This repo contains the Pytorch [1] implementation of Adversa

Learning Graph Cellular Automata This code implements the experiments from the NeurIPS 2021 paper: "Learning Graph Cellular Automata" Daniele Grattaro

Graph-Refined Convolutional Network for Multimedia Recommendation with Implicit Feedback This is our Pytorch implementation for the paper: Yinwei Wei,

RHGN Source code for CIKM 2021 paper for Relation-aware Heterogeneous Graph for User Profiling Dependencies torch==1.6.0 torchvision==0.7.0 dgl==0.7.1

Cold Brew: Distilling Graph Node Representations with Incomplete or Missing Neighborhoods Introduction Graph Neural Networks (GNNs) have demonstrated

DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning

Edge Independent Graph Models Code for the paper: "On the Power of Edge Independent Graph Models" Sudhanshu Chanpuriya, Cameron Musco, Konstantinos So

IGCN : Image-to-graph convolutional network IGCN is a learning framework for 2D/3D deformable model registration and alignment, and shape reconstructi

LEAR The implementation our EMNLP 2021 paper "Enhanced Language Representation with Label Knowledge for Span Extraction". **The code is in the "master

RMNA: A Neighbor Aggregation-Based Knowledge Graph Representation Learning Model Using Rule Mining Our code is based on Learning Attention-based Embed

简体中文 | English PaddleClas 简介 飞桨图像识别套件PaddleClas是飞桨为工业界和学术界所准备的一个图像识别任务的工具集，助力使用者训练出更好的视觉模型和应用落地。 近期更新 2021.11.1 发布PP-ShiTu技术报告，新增饮料识别demo 2021.10.23 发

Data and Code for paper Outlining and Filling: Hierarchical Query Graph Generation for Answering Complex Questions over Knowledge Graph is available f

MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in

DSP: Trajectory Prediction with Graph-based Dual-scale Context Fusion Introduction This is the project page of the paper Lu Zhang, Peiliang Li, Jing C

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

Diverse Motion Stylization (Official) This is the official Pytorch implementation of this paper. Diverse Motion Stylization for Multiple Style Domains

DiscoNet: Learning Distilled Collaboration Graph for Multi-Agent Perception [NeurIPS 2021] Yiming Li, Shunli Ren, Pengxiang Wu, Siheng Chen, Chen Feng

A large-scale database for graph representation learning