Python Medical-knowledge-graph Resources

PyCRE Conflict-aware Inference of Python Compatible Runtime Environments with Domain Knowledge Graph, ICSE 2022 Dependencies This project is developed

KIDA: Knowledge Inheritance in Data Aggregation This project releases our 1st place solution on NeurIPS2021 ML4CO Dual Task. Slide and model weights a

LUNAR Official Implementation of "LUNAR: Unifying Local Outlier Detection Methods via Graph Neural Networks" Adam Goodge, Bryan Hooi, Ng See Kiong and

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

An interactive visualization system designed to helps domain experts responsibly edit Generalized Additive Models (GAMs). For more information, check

Junction Tree Variational Autoencoder for Molecular Graph Generation Official implementation of our Junction Tree Variational Autoencoder https://arxi

MINERVA Meandering In Networks of Entities to Reach Verisimilar Answers Code and models for the paper Go for a Walk and Arrive at the Answer - Reasoni

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

Graph Neural Controlled Differential Equations for Traffic Forecasting Setup Python environment for STG-NCDE Install python environment $ conda env cr

ADD: Frequency Attention and Multi-View based Knowledge Distillation to Detect Low-Quality Compressed Deepfake Images Binh M. Le & Simon S. Woo, "ADD:

Graph WaveNet for brain network analysis This is the implementation of the Graph WaveNet model used in our manuscript: S. Wein , A. Schüller, A. M. To

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

This project is no longer maintained. If you are interested in taking over the project, email [email protected]. Welcome to django-knowledge! django-

README Needs to be improved Prerequisites Need to have graphiz installed on the machine. Refer to https://graphviz.readthedocs.io/en/stable/manual.htm

Federated learning on graph, especially on graph neural networks (GNNs), knowledge graph, and private GNN.

Papers about explainability of GNNs

subgraph-extractor Extracts data from the database for a graph-node and stores it in parquet files Installation For developing, it's recommended to us

Simple pipeline for experimenting with radiomics features Installation git clone https://github.com/piotrekwoznicki/ClassyRadiomics.git cd classrad pi

Intro Real-time object detection and classification. Paper: version 1, version 2. Read more about YOLO (in darknet) and download weight files here. In

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

ASCII Graph Plotter Plots the graph of a function with ASCII characters. See the change log here. Developed by InformaticFreak (c) 2021 How to use py

Graph Posterior Network This is the official code repository to the paper Graph Posterior Network: Bayesian Predictive Uncertainty for Node Classifica

Convert ONNX model graph to Keras model format.

CTO (Call Tree Overviewer) CTO (Call Tree Overviewer) is an IDA plugin for creating a simple and efficiant function call tree graph. It can also summa

CAPGNN Source code and dataset of the paper "Contrastive Adaptive Propagation Graph Neural Networks forEfficient Graph Learning" Paper URL: https://ar

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

TC-GNN (Running Sparse GNN on Dense Tensor Core on Ampere GPU) Cite this project and paper. @inproceedings{TC-GNN, title={TC-GNN: Accelerating Spars

Open-CyKG: An Open Cyber Threat Intelligence Knowledge Graph Model Description Open-CyKG is a framework that is constructed using an attenti

Decoupled Spatial-Temporal Graph Neural Networks Code for our paper: Decoupled Dynamic Spatial-Temporal Graph Neural Network for Traffic Forecasting.

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation This repository contains the Pytorch implementation of the proposed

Permutation Invariant Graph Generation via Score-Based Generative Modeling This repo contains the official implementation for the paper Permutation In

Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structures Code for the Multiplex Molecular Graph Neural Network (M

Efficient Graph Similarity Computation - (EGSC) This repo contains the source code and dataset for our paper: Slow Learning and Fast Inference: Effici

Reminder ST-GCN has transferred to MMSkeleton, and keep on developing as an flexible open source toolbox for skeleton-based human understanding. You a

slam-playground Educational 2D SLAM implementation based on ICP and Pose Graph How to use: Use keyboard arrow keys to navigate robot. Press 'r' to vie

To run a generation experiment (either conceptnet or atomic), follow these instructions: First Steps First clone, the repo: git clone https://github.c

K-BERT Sorce code and datasets for "K-BERT: Enabling Language Representation with Knowledge Graph", which is implemented based on the UER framework. R

LUKE (Language Understanding with Knowledge-based Embeddings) is a new pre-trained contextualized representation of words and entities based on transf

KEPLER: A Unified Model for Knowledge Embedding and Pre-trained Language Representation Source code for TACL 2021 paper KEPLER: A Unified Model for Kn

This repository contains code for: Fusion-in-Decoder models Distilling Knowledge from Reader to Retriever Dependencies Python 3 PyTorch (currently tes

FKD: A Fast Knowledge Distillation Framework for Visual Recognition Official PyTorch implementation of paper A Fast Knowledge Distillation Framework f

DOC | Quick Start | 中文 Breaking News !! 🔥 🔥 🔥 OGB-LSC KDD CUP 2021 winners announced!! (2021.06.17) Super excited to announce our PGL team won TWO

This repository is an official PyTorch(Geometric) implementation of G^2GNN in "Imbalanced Graph Classification via Graph-of-Graph Neural Networks". Th

Efficient Graph Similarity Computation - (EGSC) This repo contains the source code and dataset for our paper: Slow Learning and Fast Inference: Effici

Knowledge-enhanced Contrastive Learning (KCL) Molecular Contrastive Learning with Chemical Element Knowledge Graph [ AAAI 2022 ]. We construct a Chemi

GSAN Introduction Code for paper GSAN: Graph Self-Attention Network for Learning Spatial-Temporal Interaction Representation in Autonomous Driving, wh

ts2vg: Time series to visibility graphs The Python ts2vg package provides high-performance algorithm implementations to build visibility graphs from t

FKD: A Fast Knowledge Distillation Framework for Visual Recognition Official PyTorch implementation of paper A Fast Knowledge Distillation Framework f

PLUR (Programming-Language Understanding and Repair) is a collection of source code datasets suitable for graph-based machine learning. We provide scripts for downloading, processing, and loading the datasets. This is done by offering a unified API and data structures for all datasets.

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

Open Sesame This repository contains the code for the paper Open Sesame: Getting Inside BERT's Linguistic Knowledge. Credits We built the project on t

KnowledgeEditor Code for Editing Factual Knowledge in Language Models (https://arxiv.org/abs/2104.08164). @inproceedings{decao2021editing, title={Ed

LANKA This is the source code for paper: Knowledgeable or Educated Guess? Revisiting Language Models as Knowledge Bases (ACL 2021, long paper) Referen

Pretrained Language Model This repository provides the latest pretrained language models and its related optimization techniques developed by Huawei N

EasyTransfer is designed to make the development of transfer learning in NLP applications easier. The literature has witnessed the success of applying

#Sentic GCN Introduction This repository was used in our paper: Aspect-Based Sentiment Analysis via Affective Knowledge Enhanced Graph Convolutional N

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

multilingual-mrc-isdg Code for the AAAI 2022 paper "Zero-Shot Cross-Lingual Machine Reading Comprehension via Inter-Sentence Dependency Graph". This r

Self-Supervised Graph Representation Learning via Topology Transformations This repository is the official PyTorch implementation of the following pap

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

decentralized-gnn A package for implementing and simulating decentralized Graph Neural Network algorithms for classification of peer-to-peer nodes. De

Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks Requirements python 0.10+ rdkit 2020.03.3.0 biopython 1.78 openbabel 2.4

Comprehensive Knowledge Distillation with Causal Intervention This repository is a PyTorch implementation of "Comprehensive Knowledge Distillation wit

PyContinual (An Easy and Extendible Framework for Continual Learning) Easy to Use You can sumply change the baseline, backbone and task, and then read

Adversarial Attacks on Graph Classification via Bayesian Optimisation @ NeurIPS 2021 This repository contains the official implementation of GRABNEL,

Discovering Dynamic Salient Regions with Spatio-Temporal Graph Neural Networks This is the official code for DyReg model inroduced in Discovering Dyna

Graph Neural Topic Model (GNTM) This is the pytorch implementation of the paper "Topic Modeling Revisited: A Document Graph-based Neural Network Persp

Graph Augmentation Graph augmentation/self-supervision/etc. Algorithms gcn gcn+virtual node gin gin+virtual node PNA GraphTrans Augmentation methods N

ReFine: Multi-Grained Explainability for GNNs We are trying hard to update the code, but it may take a while to complete due to our tight schedule rec

EIGNN: Efficient Infinite-Depth Graph Neural Networks The official implementation of EIGNN: Efficient Infinite-Depth Graph Neural Networks (NeurIPS 20

Directed Graph Contrastive Learning Paper | Poster | Supplementary The PyTorch implementation of Directed Graph Contrastive Learning (DiGCL). In this

Code for "Solving Graph-based Public Good Games with Tree Search and Imitation Learning" This is the code for the paper Solving Graph-based Public Goo

Introduction This repository is the official PyTorch implementation of Data-free Knowledge Distillation for Object Detection, WACV 2021. Data-free Kno

PyDGN Wiki Description This is a Python library to easily experiment with Deep Graph Networks (DGNs). It provides automatic management of data splitti

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

Unsupervised Image Denoising with Frequency Domain Knowledge (BMVC 2021 Oral) : Official Project Page This repository provides the official PyTorch im

Description The source code and data for my paper titled Linguistic Knowledge in Data Augmentation for Natural Language Processing: An Example on Chin

ESP32-IoT-button-graph-test ESP32 recording button presses, and serving webpage via webSockets in order to graph the responses. The objective was to t

Unsupervised Image Denoising with Frequency Domain Knowledge (BMVC 2021 Oral) : Official Project Page This repository provides the official PyTorch im

Data and evaluation code for the paper WikiNEuRal: Combined Neural and Knowledge-based Silver Data Creation for Multilingual NER. @inproceedings{tedes

GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Model This repository is the official PyTorch implementation of GraphRNN, a graph gene

Knowledge Enhanced Sports Game Summarization Cooming Soon! :) Data will be released after approval process. Code will be published once the author of

KDD CUP 2020: AutoGraph Team: aister Members: Jianqiang Huang, Xingyuan Tang, Mingjian Chen, Jin Xu, Bohang Zheng, Yi Qi, Ke Hu, Jun Lei Team Introduc

Repository for the paper "Graph Auto-Encoders for Financial Clustering" Requirements Python 3.6 torch torch_geometric Instructions This is a simple c

🔍 E-Commerce recommender demo 🔍 This is a simple stream setup that uses Memgraph to ingest real-time data from a simulated online store. Data is str

Patient Knowledge Distillation for BERT Model Compression Knowledge distillation for BERT model Installation Run command below to install the environm

Steps to run = Download the cora dataset from this link : https://linqs.soe.ucsc.edu/data unzip the files in the folder input/cora cd code python eda

OANet implementation Pytorch implementation of OANet for ICCV'19 paper "Learning Two-View Correspondences and Geometry Using Order-Aware Network", by

Calculator 🖩 A simple calculator written in python allows you to make simple calculations, write charts, calculate the dates, and exchange currency.

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

SPTAG: A library for fast approximate nearest neighbor search SPTAG SPTAG (Space Partition Tree And Graph) is a library for large scale vector approxi

This repository holds the implementation for paper Towards Open-World Feature Extrapolation: An Inductive Graph Learning Approach Download our preproc

Parameterized Hypercomplex Graph Neural Networks (PHC-GNNs) PHC-GNNs (Le et al., 2021): https://arxiv.org/abs/2103.16584 PHM Linear Layer Illustration

SSR (NeurIPS 2021) Pytorch implementation of paper "Re-ranking for image retrieval and transductivefew-shot classification" [Paper] [Project webpage]

SAGCN - Official PyTorch Implementation | Paper | Project Page This is the official implementation of the paper "Steganographer detection via a simila

g2o - General Graph Optimization Linux: Windows: g2o is an open-source C++ framework for optimizing graph-based nonlinear error functions. g2o has bee

ADGC: Awesome Deep Graph Clustering ADGC is a collection of state-of-the-art (SOTA), novel deep graph clustering methods (papers, codes and datasets).

Orbitals in Python A small collection of tools made by me, that you can use to visualize atomic orbitals in both 2D and 3D in different aspects, and o

SURGE: Sequential Recommendation with Graph Neural Networks This is our TensorFlow implementation for the paper: Sequential Recommendation with Graph

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv