Python Medical-knowledge-graph Resources

Heterogeneous-Deep-Graph-Infomax Parameter Setting: HDGI-A: Node-level dimension: 16 Attention head: 4 Semantic-level attention vector: 8 learning rat

Subg-Con Sub-graph Contrast for Scalable Self-Supervised Graph Representation Learning (Jiao et al., ICDM 2020): https://arxiv.org/abs/2009.10273 Over

Graph-InfoClust-GIC [PAKDD 2021] PAKDD'21 version Graph InfoClust: Maximizing Coarse-Grain Mutual Information in Graphs Preprint version Graph InfoClu

MC Outpost A Python server and client application that tracks player session times and server status About MC Outpost provides a session graph and ser

PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a

Block Modeling-Guided Graph Convolutional Neural Networks This repository contains the demo code of the paper: Block Modeling-Guided Graph Convolution

InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization Authors: Fan-yun Sun, Jordan Hoffm

NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).

SelfTask-GNN A PyTorch implementation of "Self-supervised Learning on Graphs: Deep Insights and New Directions". [paper] In this paper, we first deepe

Graph-Bert Source code of "Graph-Bert: Only Attention is Needed for Learning Graph Representations". Please check the script.py as the entry point. We

Pretrain-Recsys This is our Tensorflow implementation for our WSDM 2021 paper: Bowen Hao, Jing Zhang, Hongzhi Yin, Cuiping Li, Hong Chen. Pre-Training

SLAPS-GNN This repo contains the implementation of the model proposed in SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networks

G-Bert Pre-training of Graph Augmented Transformers for Medication Recommendation Intro G-Bert combined the power of Graph Neural Networks and BERT (B

GPT-GNN: Generative Pre-Training of Graph Neural Networks GPT-GNN is a pre-training framework to initialize GNNs by generative pre-training. It can be

Self-supervised Auxiliary Learning with Meta-paths for Heterogeneous Graphs This repository is the implementation of SELAR. Dasol Hwang* , Jinyoung Pa

deeper_insights_into_GCNs Deeper insights into graph convolutional networks for semi-supervised learning References data and utils.py come from Implem

Reference Code for AAAI-20 paper "Multi-Stage Self-Supervised Learning for Graph Convolutional Networks on Graphs with Few Labels" Please refer to htt

Self-supervised edge features for improved Graph Neural Network training Data availability: Here is a link to the raw data for the organoids dataset.

DrRepair: Learning to Repair Programs from Error Messages This repo provides the source code & data of our paper: Graph-based, Self-Supervised Program

Implementation for the papers: Self-Supervised Hyperboloid Representations from Logical Queries over Knowledge Graphs, Nurendra Choudhary, Nikhil Rao,

Contrastive learning of global and local features for medical image segmentation with limited annotations The code is for the article "Contrastive lea

There is More than Meets the Eye: Self-Supervised Multi-Object Detection and Tracking with Sound by Distilling Multimodal Knowledge MM-DistillNet is a

Knowledge Bridging for Empathetic Dialogue Generation This is the official implementation for paper Knowledge Bridging for Empathetic Dialogue Generat

SAG-DTA The code is the implementation for the paper 'SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network'. Requirements py

Cross Domain Facial Expression Recognition Benchmark Implementation of papers: Cross-Domain Facial Expression Recognition: A Unified Evaluation Benchm

Medical-Image-Triage-and-Classification-System-Based-on-COVID-19-CT-and-X-ray-Sc

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

MS Graph API authentication example with Fast API What it is & does This is a simple python service/webapp, using FastAPI with server side rendering,

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

Weak-supervised Visual Geo-localization via Attention-based Knowledge Distillation Introduction WAKD is a PyTorch implementation for our ICPR-2022 pap

FFA-IR The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark." The framework is inheri

pysal/spaghetti SPAtial GrapHs: nETworks, Topology, & Inference Spaghetti is an open-source Python library for the analysis of network-based spatial d

tfgraphviz tfgraphviz is a module to visualize a TensorFlow's data flow graph like TensorBoard using Graphviz. tfgraphviz enables to provide a visuali

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

Build an Amazon SageMaker Pipeline to Transform Raw Texts to A Knowledge Graph This repository provides a pipeline to create a knowledge graph from ra

PyNode Next A complete rewrite of PyNode for the modern era. Up to five times faster than the original PyNode. PyNode Next allows you to easily create

This repository contains sample code scripts for creating awesome data visualizations from scratch using different python libraries (such as matplotli

Transcript Analysis - Graph + NLP This program extracts insights from Zoom Meeting Transcripts (.vtt) using TigerGraph and NLTK. In order to run this

DAG_Generator Random Directed Acyclic Graph Generator verison1.0 简介 工作流通常由DAG（有向无环图）来定义，其中每个计算任务$T_i$由一个顶点(node,task,vertex)表示。同时，任务之间的每个数据或控制依赖性由一条加权

title emoji colorFrom colorTo sdk app_file pinned decontextualizer 📤 green gray streamlit main.py false Decontextualizer As a second step in improvin

Multimodal Trajectory Prediction Conditioned on Lane-Graph Traversals This repository contains code for "Multimodal trajectory prediction conditioned

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

Neointerface - Neo4j made easy for Python programmers! A Python interface to use the Neo4j graph database, and simplify its use. class NeoInterface: C

HyFactor Graph-based architectures are becoming increasingly popular as a tool for structure generation. Here, we introduce a novel open-source archit

ForceAtlas2 for Python A port of Gephi's Force Atlas 2 layout algorithm to Python 2 and Python 3 (with a wrapper for NetworkX and igraph). This is the

gdsclient NOTE: This is a work in progress and many GDS features are known to be missing or not working properly. This repo hosts the sources for gdsc

gdsclient This repo hosts the sources for gdsclient, a Python wrapper API for operating and working with the Neo4j Graph Data Science (GDS) library. g

deepGCFX PyTorch implementation for our AAAI 2022 Paper "Graph-wise Common Latent Factor Extraction for Unsupervised Graph Representation Learning" Pr

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

MISSFormer Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_add

Fonduer is a Python package and framework for building knowledge base construction (KBC) applications from richly formatted data. Note that Fonduer is

ReFine: Multi-Grained Explainability for GNNs This is the official code for Towards Multi-Grained Explainability for Graph Neural Networks (NeurIPS 20

CPPE - 5 CPPE - 5 (Medical Personal Protective Equipment) is a new challenging dataset with the goal to allow the study of subordinate categorization

SSL_OSC Graph Self-Supervised Learning for Optoelectronic Properties of Organic Semiconductors

Documentation | External Resources | Datasets | Examples ChemicalX is a deep learning library for drug-drug interaction, polypharmacy side effect and

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

KiwiDB HTTP graph database built in Python 3. Reference Format References are strings in the format: {refIDENTIFIER@GROUP} Authentication Currently, t

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

Target Adaptive Context Aggregation for Video Scene Graph Generation This is a PyTorch implementation for Target Adaptive Context Aggregation for Vide

ICCV'21 Context-aware Scene Graph Generation with Seq2Seq Transformers Authors: Yichao Lu*, Himanshu Rai*, Cheng Chang*, Boris Knyazev†, Guangwei Yu,

Graph Notebook: easily query and visualize graphs The graph notebook provides an easy way to interact with graph databases using Jupyter notebooks. Us

Cog - Embedded Graph Database for Python cogdb.io New release: 2.0.5! Installing Cog pip install cogdb Cog is a persistent embedded graph database im

Edge-augmented Graph Transformer Introduction This is the official implementation of the Edge-augmented Graph Transformer (EGT) as described in https:

Pretrained Language Model This repository provides the latest pretrained language models and its related optimization techniques developed by Huawei N

LUKE (Language Understanding with Knowledge-based Embeddings) is a new pre-trained contextualized representation of words and entities based on transf

Knover Knover is a toolkit for knowledge grounded dialogue generation based on PaddlePaddle. Knover allows researchers and developers to carry out eff

CGPN This is the repository for the NeurIPS-21 paper [Contrastive Graph Poisson Networks: Semi-Supervised Learning with Extremely Limited Labels]. Req

PyContinual (An Easy and Extendible Framework for Continual Learning) Easy to Use You can sumply change the baseline, backbone and task, and then read

Gihan Jayatilaka*, Jameel Hassan*, Suren Sritharan*, Janith Senananayaka, Harshana Weligampola, et. al., 2021. Holistic Interpretation of Public Scenes Using Computer Vision and Temporal Graphs to Identify Social Distancing Violations. arXiv preprint.

Decentralised graph database management system To get started clone the repo, and run the command below. python3 database.py Now, create a new termina

Docker Network Graph Visualize the relationship between Docker networks and containers as a neat graphviz graph. Example Usage usage: docker-net-graph

Hierarchical Clustering: O(1)-Approximation for Well-Clustered Graphs This repository contains code to accompany the paper "Hierarchical Clustering: O

Dual Correlation Reduction Network An official source code for paper Deep Graph Clustering via Dual Correlation Reduction, accepted by AAAI 2022. Any

Sparse Structure Learning via Graph Neural Networks for inductive document classification Make graph dataset create co-occurrence graph for datasets.

How to apply? Create your config.ini file following the example provided in config.ini Choose one of the options below to run: Run with Python3 pip in

Sleep_Staging_Knowledge Distillation This codebase implements knowledge distillation approach for ECG based sleep staging assisted by EEG based sleep

Lightweight-Deep-CNN-for-Natural-Image-Matting-via-Similarity-Preserving-Knowledge-Distillation Introduction Accepted at IEEE Signal Processing Letter

SHGNN: Structure-Aware Heterogeneous Graph Neural Network The source code and dataset of the paper: SHGNN: Structure-Aware Heterogeneous Graph Neural

Lambekseq "Everyone who failed Greek or Latin hates it." This package is for proving theorems in Categorial grammars (CG) and constructing semantic gr

Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels The implementation of Hypernet-Ensemble Le

RDFLib RDFLib is a pure Python package for working with RDF. RDFLib contains most things you need to work with RDF, including: parsers and serializers

PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data.

# 1. Installing Maven & Pandas First, please install Java (JDK11) and Python 3 if they are not already. Next, make sure that Maven (for importing J

LUNAR Official Implementation of "LUNAR: Unifying Local Outlier Detection Methods via Graph Neural Networks" Adam Goodge, Bryan Hooi, Ng See Kiong and

Contents AnonyGAN Installation Dataset Preparation Generating Images Using Pretrained Model Train and Test New Models Evaluation Acknowledgments Citat

Mask-invariant Face Recognition through Template-level Knowledge Distillation This is the official repository of "Mask-invariant Face Recognition thro

Monte Carlo python simulation Install linux dependencies sudo apt update sudo apt install build-essential \ software-properties-commo

KIDA: Knowledge Inheritance in Data Aggregation This project releases our 1st place solution on NeurIPS2021 ML4CO Dual Task. Slide and model weights a

CogniPy for Pandas - In-memory Graph Database and Knowledge Graph with Natural Language Interface Whats in the box Reasoning, exploration of RDF/OWL,

WSDM 2022 Large-scale Temporal Graph Link Prediction - Baseline and Initial Test Set WSDM Cup Website link Link to this challenge This branch offers A

HetGAN Implementation of Heterogeneous Graph Attention Network This is the code repository of paper "Prediction of Metro Ridership During the COVID-19

Knowledge Graph Embeddings and Chemical Effect Prediction, 2020. Scripts and outputs related to the paper Prediction of Adverse Biological Effects of

Enhancing Column Generation by a Machine-Learning-BasedPricing Heuristic for Graph Coloring (to appear at AAAI 2022) We propose a machine-learning-bas

AKGNN The source code for Adaptive Kernel Graph Neural Network at AAAI2022. Please cite our paper if you think our work is helpful to you: @inproceedi

Wikidated Wikidated 1.0 is a dataset of Wikidata’s full revision history, which encodes changes between Wikidata revisions as sets of deletions and ad

DiffMG This repository contains the code for our KDD 2021 Research Track paper: DiffMG: Differentiable Meta Graph Search for Heterogeneous Graph Neura

Introduction K-PLUG: Knowledge-injected Pre-trained Language Model for Natural Language Understanding and Generation in E-Commerce. Installation PyTor

Learning From Multiple Experts: Self-paced Knowledge Distillation for Long-tailed Classification Implementation of "Learning From Multiple Experts: Se