674 Repositories
Python neighborhood-graph Libraries
The implement of papar "Enhanced Graph Learning for Collaborative Filtering via Mutual Information Maximization"
SIGIR2021-EGLN The implement of paper "Enhanced Graph Learning for Collaborative Filtering via Mutual Information Maximization" Neural graph based Col
A PyTorch implementation of the Relational Graph Convolutional Network (RGCN).
Torch-RGCN Torch-RGCN is a PyTorch implementation of the RGCN, originally proposed by Schlichtkrull et al. in Modeling Relational Data with Graph Conv
A weakly-supervised scene graph generation codebase. The implementation of our CVPR2021 paper ``Linguistic Structures as Weak Supervision for Visual Scene Graph Generation''
README.md shall be finished soon. WSSGG 0 Overview 1 Installation 1.1 Faster-RCNN 1.2 Language Parser 1.3 GloVe Embeddings 2 Settings 2.1 VG-GT-Graph
Official PyTorch implementation of the paper: Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting.
Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting Official PyTorch implementation of the paper: Improving Graph Neural Net
PyTorch implementation of spectral graph ConvNets, NIPS’16
Graph ConvNets in PyTorch October 15, 2017 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbresson
Graph Convolutional Networks in PyTorch
Graph Convolutional Networks in PyTorch PyTorch implementation of Graph Convolutional Networks (GCNs) for semi-supervised classification [1]. For a hi
PanGraphViewer -- show panenome graph in an easy way
PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for
Danfeng Hong, Lianru Gao, Jing Yao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot. Graph Convolutional Networks for Hyperspectral Image Classification, IEEE TGRS, 2021.
Graph Convolutional Networks for Hyperspectral Image Classification Danfeng Hong, Lianru Gao, Jing Yao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot T
Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks.
Heterogeneous Graph Benchmark Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks. Roadmap We organize our repo by task, and on
This is the official implementation for "Do Transformers Really Perform Bad for Graph Representation?".
Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl
TorchDrug is a PyTorch-based machine learning toolbox designed for drug discovery
A powerful and flexible machine learning platform for drug discovery
Collective Multi-type Entity Alignment Between Knowledge Graphs (WWW'20)
CG-MuAlign A reference implementation for "Collective Multi-type Entity Alignment Between Knowledge Graphs", published in WWW 2020. If you find our pa
Defending graph neural networks against adversarial attacks (NeurIPS 2020)
GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.
PyGCL: Graph Contrastive Learning Library for PyTorch
PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL components from published papers, standardized evaluation, and experiment management.
open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)
中文开放信息抽取系统, open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)
PyGCL: Graph Contrastive Learning Library for PyTorch
PyGCL: Graph Contrastive Learning for PyTorch PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL com
Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks"
HKD Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks" cifia-100 result The implementation of compared methods are ba
A PyTorch Implementation of Gated Graph Sequence Neural Networks (GGNN)
A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G
Convolutional 2D Knowledge Graph Embeddings resources
ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes
GNN4Traffic - This is the repository for the collection of Graph Neural Network for Traffic Forecasting
GNN4Traffic - This is the repository for the collection of Graph Neural Network for Traffic Forecasting
TilinGNN: Learning to Tile with Self-Supervised Graph Neural Network (SIGGRAPH 2020)
TilinGNN: Learning to Tile with Self-Supervised Graph Neural Network (SIGGRAPH 2020) About The goal of our research problem is illustrated below: give
Rubrix is a free and open-source tool for exploring and iterating on data for artificial intelligence projects.
Open-source tool for exploring, labeling, and monitoring data for AI projects
A PyTorch implementation of "Graph Wavelet Neural Network" (ICLR 2019)
Graph Wavelet Neural Network ⠀⠀ A PyTorch implementation of Graph Wavelet Neural Network (ICLR 2019). Abstract We present graph wavelet neural network
A PyTorch Implementation of "Watch Your Step: Learning Node Embeddings via Graph Attention" (NeurIPS 2018).
Attention Walk ⠀⠀ A PyTorch Implementation of Watch Your Step: Learning Node Embeddings via Graph Attention (NIPS 2018). Abstract Graph embedding meth
A PyTorch implementation of "Signed Graph Convolutional Network" (ICDM 2018).
SGCN ⠀ A PyTorch implementation of Signed Graph Convolutional Network (ICDM 2018). Abstract Due to the fact much of today's data can be represented as
A PyTorch Implementation of "SINE: Scalable Incomplete Network Embedding" (ICDM 2018).
Scalable Incomplete Network Embedding ⠀⠀ A PyTorch implementation of Scalable Incomplete Network Embedding (ICDM 2018). Abstract Attributed network em
A PyTorch implementation of "Graph Classification Using Structural Attention" (KDD 2018).
GAM ⠀⠀ A PyTorch implementation of Graph Classification Using Structural Attention (KDD 2018). Abstract Graph classification is a problem with practic
TuckER: Tensor Factorization for Knowledge Graph Completion
TuckER: Tensor Factorization for Knowledge Graph Completion This codebase contains PyTorch implementation of the paper: TuckER: Tensor Factorization f
A PyTorch implementation of "SimGNN: A Neural Network Approach to Fast Graph Similarity Computation" (WSDM 2019).
SimGNN ⠀⠀⠀ A PyTorch implementation of SimGNN: A Neural Network Approach to Fast Graph Similarity Computation (WSDM 2019). Abstract Graph similarity s
A PyTorch implementation of "Predict then Propagate: Graph Neural Networks meet Personalized PageRank" (ICLR 2019).
APPNP ⠀ A PyTorch implementation of Predict then Propagate: Graph Neural Networks meet Personalized PageRank (ICLR 2019). Abstract Neural message pass
An implementation of "MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing" (ICML 2019).
MixHop and N-GCN ⠀ A PyTorch implementation of "MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing" (ICML 2019)
A Pytorch implementation of "Splitter: Learning Node Representations that Capture Multiple Social Contexts" (WWW 2019).
Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte
A PyTorch implementation of "Capsule Graph Neural Network" (ICLR 2019).
CapsGNN ⠀⠀ A PyTorch implementation of Capsule Graph Neural Network (ICLR 2019). Abstract The high-quality node embeddings learned from the Graph Neur
A PyTorch implementation of "Semi-Supervised Graph Classification: A Hierarchical Graph Perspective" (WWW 2019)
SEAL ⠀⠀⠀ A PyTorch implementation of Semi-Supervised Graph Classification: A Hierarchical Graph Perspective (WWW 2019) Abstract Node classification an
A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019).
ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A
Code for the paper: "On the Bottleneck of Graph Neural Networks and Its Practical Implications"
On the Bottleneck of Graph Neural Networks and its Practical Implications This is the official implementation of the paper: On the Bottleneck of Graph
A heterogeneous entity-augmented academic language model based on Open Academic Graph (OAG)
Library | Paper | Slack We released two versions of OAG-BERT in CogDL package. OAG-BERT is a heterogeneous entity-augmented academic language model wh
Official implementation of the ICML2021 paper "Elastic Graph Neural Networks"
ElasticGNN This repository includes the official implementation of ElasticGNN in the paper "Elastic Graph Neural Networks" [ICML 2021]. Xiaorui Liu, W
Parameterized Explainer for Graph Neural Network
PGExplainer This is a Tensorflow implementation of the paper: Parameterized Explainer for Graph Neural Network https://arxiv.org/abs/2011.04573 NeurIP
A collection of research papers and software related to explainability in graph machine learning.
A collection of research papers and software related to explainability in graph machine learning.
🤖 A Python library for learning and evaluating knowledge graph embeddings
PyKEEN PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-m
Monitor your Binance portfolio
Binance Report Bot The intent of this bot is to take a snapshot of your binance wallet, e.g. the current balances and store it for further plotting. I
graph-theoretic framework for robust pairwise data association
CLIPPER: A Graph-Theoretic Framework for Robust Data Association Data association is a fundamental problem in robotics and autonomy. CLIPPER provides
Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).
Self-supervised Graph-level Representation Learning with Local and Global Structure Introduction This project is an implementation of ``Self-supervise
Code for KDD'20 "An Efficient Neighborhood-based Interaction Model for Recommendation on Heterogeneous Graph"
Heterogeneous INteract and aggreGatE (GraphHINGE) This is a pytorch implementation of GraphHINGE model. This is the experiment code in the following w
box is a text-based visual programming language inspired by Unreal Engine Blueprint function graphs.
Box is a text-based visual programming language inspired by Unreal Engine blueprint function graphs. $ cat factorial.box ┌─ƒ(Factorial)───┐
PyTorch implementation of Graph Convolutional Networks in Feature Space for Image Deblurring and Super-resolution, IJCNN 2021.
GCResNet PyTorch implementation of Graph Convolutional Networks in Feature Space for Image Deblurring and Super-resolution, IJCNN 2021. The code will
This is my reading list for my PhD in AI, NLP, Deep Learning and more.
This is my reading list for my PhD in AI, NLP, Deep Learning and more.
This is the source code for our ICLR2021 paper: Adaptive Universal Generalized PageRank Graph Neural Network.
GPRGNN This is the source code for our ICLR2021 paper: Adaptive Universal Generalized PageRank Graph Neural Network. Hidden state feature extraction i
Official PyTorch implementation of "Physics-aware Difference Graph Networks for Sparsely-Observed Dynamics".
Physics-aware Difference Graph Networks for Sparsely-Observed Dynamics This repository is the official PyTorch implementation of "Physics-aware Differ
Code for "Learning Canonical Representations for Scene Graph to Image Generation", Herzig & Bar et al., ECCV2020
Learning Canonical Representations for Scene Graph to Image Generation (ECCV 2020) Roei Herzig*, Amir Bar*, Huijuan Xu, Gal Chechik, Trevor Darrell, A
Pytorch implementation of “Recursive Non-Autoregressive Graph-to-Graph Transformer for Dependency Parsing with Iterative Refinement”
Graph-to-Graph Transformers Self-attention models, such as Transformer, have been hugely successful in a wide range of natural language processing (NL
Graph4nlp is the library for the easy use of Graph Neural Networks for NLP
Graph4NLP Graph4NLP is an easy-to-use library for R&D at the intersection of Deep Learning on Graphs and Natural Language Processing (i.e., DLG4NLP).
Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2
Graph Transformer - Pytorch Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2. This was recently used by bot
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
DeepCDR Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network This work has been accepted to ECCB2020 and was also published in the
FinGAT: A Financial Graph Attention Networkto Recommend Top-K Profitable Stocks
FinGAT: A Financial Graph Attention Networkto Recommend Top-K Profitable Stocks This is our implementation for the paper: FinGAT: A Financial Graph At
Random Walk Graph Neural Networks
Random Walk Graph Neural Networks This repository is the official implementation of Random Walk Graph Neural Networks. Requirements Code is written in
JittorVis is a deep neural network computational graph visualization library based on Jittor.
JittorVis - Visual understanding of deep learning model.
Neighborhood Contrastive Learning for Novel Class Discovery
Neighborhood Contrastive Learning for Novel Class Discovery This repository contains the official implementation of our paper: Neighborhood Contrastiv
Create a Neo4J graph of users and roles trust policies within an AWS Organization.
AWS_ORG_MAPPER This tool uses sso-oidc to authenticate to the AWS organization. Once authenticated the tool will attempt to enumerate all users and ro
Continuous Diffusion Graph Neural Network
We present Graph Neural Diffusion (GRAND) that approaches deep learning on graphs as a continuous diffusion process and treats Graph Neural Networks (GNNs) as discretisations of an underlying PDE.
graph learning code for ogb
The final code for OGB Installation Requirements: ogb=1.3.1 torch=1.7.0 torch-geometric=1.7.0 torch-scatter=2.0.6 torch-sparse=0.6.9 Baseline models T
Using pretrained language models for biomedical knowledge graph completion.
LMs for biomedical KG completion This repository contains code to run the experiments described in: Scientific Language Models for Biomedical Knowledg
[ICML 2021] "Graph Contrastive Learning Automated" by Yuning You, Tianlong Chen, Yang Shen, Zhangyang Wang
Graph Contrastive Learning Automated PyTorch implementation for Graph Contrastive Learning Automated [talk] [poster] [appendix] Yuning You, Tianlong C
Leveraging Two Types of Global Graph for Sequential Fashion Recommendation, ICMR 2021
This is the repo for the paper: Leveraging Two Types of Global Graph for Sequential Fashion Recommendation Requirements OS: Ubuntu 16.04 or higher ver
This is the official implementation for "Do Transformers Really Perform Bad for Graph Representation?".
Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl
Implementation of "GNNAutoScale: Scalable and Expressive Graph Neural Networks via Historical Embeddings" in PyTorch
PyGAS: Auto-Scaling GNNs in PyG PyGAS is the practical realization of our G NN A uto S cale (GAS) framework, which scales arbitrary message-passing GN
Code for Graph-to-Tree Learning for Solving Math Word Problems (ACL 2020)
Graph-to-Tree Learning for Solving Math Word Problems PyTorch implementation of Graph based Math Word Problem solver described in our ACL 2020 paper G
Unofficial TensorFlow implementation of Protein Interface Prediction using Graph Convolutional Networks.
[TensorFlow] Protein Interface Prediction using Graph Convolutional Networks Unofficial TensorFlow implementation of Protein Interface Prediction usin
The source code of the paper "Understanding Graph Neural Networks from Graph Signal Denoising Perspectives"
GSDN-F and GSDN-EF This repository provides a reference implementation of GSDN-F and GSDN-EF as described in the paper "Understanding Graph Neural Net
Degree-Quant: Quantization-Aware Training for Graph Neural Networks.
Degree-Quant This repo provides a clean re-implementation of the code associated with the paper Degree-Quant: Quantization-Aware Training for Graph Ne
Paddle implementation for "Highly Efficient Knowledge Graph Embedding Learning with Closed-Form Orthogonal Procrustes Analysis" (NAACL 2021)
ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re
Code for the paper "How Attentive are Graph Attention Networks?"
How Attentive are Graph Attention Networks? This repository is the official implementation of How Attentive are Graph Attention Networks?. The PyTorch
This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization'. (published in Bioinformatics'21)
SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization This is the code for our paper ``SumGNN: Multi-typed Drug
A tensorflow implementation of GCN-LPA
GCN-LPA This repository is the implementation of GCN-LPA (arXiv): Unifying Graph Convolutional Neural Networks and Label Propagation Hongwei Wang, Jur
Implementation for Simple Spectral Graph Convolution in ICLR 2021
Simple Spectral Graph Convolutional Overview This repo contains an example implementation of the Simple Spectral Graph Convolutional (S^2GC) model. Th
(AAAI2020)Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing
Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing This repository contains pytorch source code for AAAI2020 oral paper: Grapy-ML
jaxfg - Factor graph-based nonlinear optimization library for JAX.
Factor graphs + nonlinear optimization in JAX
Explore related sequences in the OEIS
OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on
Deep functional residue identification
DeepFRI Deep functional residue identification Citing @article {Gligorijevic2019, author = {Gligorijevic, Vladimir and Renfrew, P. Douglas and Koscio
Tensorflow implementation for Self-supervised Graph Learning for Recommendation
If the compilation is successful, the evaluator of cpp implementation will be called automatically. Otherwise, the evaluator of python implementation will be called.
Codes for our IJCAI21 paper: Dialogue Discourse-Aware Graph Model and Data Augmentation for Meeting Summarization
DDAMS This is the pytorch code for our IJCAI 2021 paper Dialogue Discourse-Aware Graph Model and Data Augmentation for Meeting Summarization [Arxiv Pr
An Unsupervised Graph-based Toolbox for Fraud Detection
An Unsupervised Graph-based Toolbox for Fraud Detection Introduction: UGFraud is an unsupervised graph-based fraud detection toolbox that integrates s
Official source code to CVPR'20 paper, "When2com: Multi-Agent Perception via Communication Graph Grouping"
When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi
Expressive Power of Invariant and Equivaraint Graph Neural Networks (ICLR 2021)
Expressive Power of Invariant and Equivaraint Graph Neural Networks In this repository, we show how to use powerful GNN (2-FGNN) to solve a graph alig
[WWW 2021] Source code for "Graph Contrastive Learning with Adaptive Augmentation"
GCA Source code for Graph Contrastive Learning with Adaptive Augmentation (WWW 2021) For example, to run GCA-Degree under WikiCS, execute: python trai
TraND: Transferable Neighborhood Discovery for Unsupervised Cross-domain Gait Recognition.
TraND This is the code for the paper "Jinkai Zheng, Xinchen Liu, Chenggang Yan, Jiyong Zhang, Wu Liu, Xiaoping Zhang and Tao Mei: TraND: Transferable
A static analysis library for computing graph representations of Python programs suitable for use with graph neural networks.
python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu
Code for paper PairRE: Knowledge Graph Embeddings via Paired Relation Vectors.
PairRE Code for paper PairRE: Knowledge Graph Embeddings via Paired Relation Vectors. This implementation of PairRE for Open Graph Benchmak datasets (
Karate Club: An API Oriented Open-source Python Framework for Unsupervised Learning on Graphs (CIKM 2020)
Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks Molecular interaction networks are powerful resources for the discovery. While dee
Generative Models for Graph-Based Protein Design
Graph-Based Protein Design This repo contains code for Generative Models for Graph-Based Protein Design by John Ingraham, Vikas Garg, Regina Barzilay
A simple image/video to Desmos graph converter run locally
Desmos Bezier Renderer A simple image/video to Desmos graph converter run locally Sample Result Setup Install dependencies apt update apt install git
A Research-oriented Federated Learning Library and Benchmark Platform for Graph Neural Networks. Accepted to ICLR'2021 - DPML and MLSys'21 - GNNSys workshops.
FedGraphNN: A Federated Learning System and Benchmark for Graph Neural Networks A Research-oriented Federated Learning Library and Benchmark Platform
Boost learning for GNNs from the graph structure under challenging heterophily settings. (NeurIPS'20)
Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs Jiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann, Leman Akoglu,
Code for "Graph-Evolving Meta-Learning for Low-Resource Medical Dialogue Generation". [AAAI 2021]
Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p
[TIP2020] Adaptive Graph Representation Learning for Video Person Re-identification
Introduction This is the PyTorch implementation for Adaptive Graph Representation Learning for Video Person Re-identification. Get started git clone h
KE-Dialogue: Injecting knowledge graph into a fully end-to-end dialogue system.
Learning Knowledge Bases with Parameters for Task-Oriented Dialogue Systems This is the implementation of the paper: Learning Knowledge Bases with Par
Official code for "End-to-End Optimization of Scene Layout" -- including VAE, Diff Render, SPADE for colorization (CVPR 2020 Oral)
End-to-End Optimization of Scene Layout Code release for: End-to-End Optimization of Scene Layout CVPR 2020 (Oral) Project site, Bibtex For help conta
PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos
PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.