173 Repositories
Python sequence-diagram Libraries
A tool for generating skill map/tree like diagram
skillmap A tool for generating skill map/tree like diagram. What is a skill map/tree? Skill tree is a term used in video games, and it can be used for
🥇 LG-AI-Challenge 2022 1위 솔루션 입니다.
LG-AI-Challenge-for-Plant-Classification Dacon에서 진행된 농업 환경 변화에 따른 작물 병해 진단 AI 경진대회 에 대한 코드입니다. (colab directory에 코드가 잘 정리 되어있습니다.) Requirements python
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
rich-msa A simple module to render colorful Multiple Sequence Alignment with rich in the terminal. 🔧 Installing Install the rich-msa package directly
A workshop on data visualization in Python with notebooks and exercises for following along.
Beyond the Basics: Data Visualization in Python The human brain excels at finding patterns in visual representations, which is why data visualizations
Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework
Paper | Blog OFA is a unified multimodal pretrained model that unifies modalities (i.e., cross-modality, vision, language) and tasks (e.g., image gene
This is a pytorch implementation for the BST model from Alibaba https://arxiv.org/pdf/1905.06874.pdf
Behavior-Sequence-Transformer-Pytorch This is a pytorch implementation for the BST model from Alibaba https://arxiv.org/pdf/1905.06874.pdf This model
ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
Description: ProtFeat is designed to extract the protein features by employing POSSUM and iFeature python-based tools. ProtFeat includes a total of 39
Image Lowpoly based on Centroid Voronoi Diagram via python-opencv and taichi
CVTLowpoly: Image Lowpoly via Centroid Voronoi Diagram Image Sharp Feature Extraction using Guide Filter's Local Linear Theory via opencv-python. The
Checking fibonacci - Generating the Fibonacci sequence is a classic recursive problem
Fibonaaci Series Generating the Fibonacci sequence is a classic recursive proble
Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework
Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework
Clean and readable code for Decision Transformer: Reinforcement Learning via Sequence Modeling
Minimal implementation of Decision Transformer: Reinforcement Learning via Sequence Modeling in PyTorch for mujoco control tasks in OpenAI gym
DNA sequence classification by Deep Neural Network
DNA sequence classification by Deep Neural Network: Project Overview worked on the DNA sequence classification problem where the input is the DNA sequ
Codebase to experiment with a hybrid Transformer that combines conditional sequence generation with regression
Regression Transformer Codebase to experiment with a hybrid Transformer that combines conditional sequence generation with regression . Development se
Code for Phase diagram of Stochastic Gradient Descent in high-dimensional two-layer neural networks
Phase diagram of Stochastic Gradient Descent in high-dimensional two-layer neural networks Under construction. Description Code for Phase diagram of S
Generate database table diagram from SQL data definition.
sql2diagram Generate database table diagram from SQL data definition. e.g. "CREATE TABLE ..." See Example below How does it works? Analyze the SQL to
Sequence-tagging using deep learning
Classification using Deep Learning Requirements PyTorch version = 1.9.1+cu111 Python version = 3.8.10 PyTorch-Lightning version = 1.4.9 Huggingface
En- and decrypting text-messages by creating a key with of the fibonacci-sequence
En- and decrypting text-messages by creating a key with of the fibonacci-sequence. This key helps to create mathematical functions, whose zeros should generates the encrypted message.
Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification
Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification Introduction. This package includes the pyth
RefineGNN - Iterative refinement graph neural network for antibody sequence-structure co-design (RefineGNN)
Iterative refinement graph neural network for antibody sequence-structure co-des
Diaformer: Automatic Diagnosis via Symptoms Sequence Generation
Diaformer Diaformer: Automatic Diagnosis via Symptoms Sequence Generation (AAAI 2022) Diaformer is an efficient model for automatic diagnosis via symp
NaturalCC is a sequence modeling toolkit that allows researchers and developers to train custom models
NaturalCC NaturalCC is a sequence modeling toolkit that allows researchers and developers to train custom models for many software engineering tasks,
JASS: Japanese-specific Sequence to Sequence Pre-training for Neural Machine Translation
JASS: Japanese-specific Sequence to Sequence Pre-training for Neural Machine Translation This the repository for this paper. Find extensions of this w
Improved Fitness Optimization Landscapes for Sequence Design
ReLSO Improved Fitness Optimization Landscapes for Sequence Design Description Citation How to run Training models Original data source Description In
Accelerating BERT Inference for Sequence Labeling via Early-Exit
Sequence-Labeling-Early-Exit Code for ACL 2021 paper: Accelerating BERT Inference for Sequence Labeling via Early-Exit Requirement: Please refer to re
Pyspark sam - Analyze Big Sequence Alignments with PySpark in AWS EMR
pyspark_sam This repo hosts my code for the article "Analyze Big Sequence Alignm
sequitur is a library that lets you create and train an autoencoder for sequential data in just two lines of code
sequitur sequitur is a library that lets you create and train an autoencoder for sequential data in just two lines of code. It implements three differ
ParaGen is a PyTorch deep learning framework for parallel sequence generation
ParaGen is a PyTorch deep learning framework for parallel sequence generation. Apart from sequence generation, ParaGen also enhances various NLP tasks, including sequence-level classification, extraction and generation.
Classic algorithms including Fizz Buzz, Bubble Sort, the Fibonacci Sequence, a Sudoku solver, and more.
Algorithms Classic algorithms including Fizz Buzz, Bubble Sort, the Fibonacci Sequence, a Sudoku solver, and more. Algorithm Complexity Time and Space
A sequence of Jupyter notebooks featuring the 12 Steps to Navier-Stokes
CFD Python Please cite as: Barba, Lorena A., and Forsyth, Gilbert F. (2018). CFD Python: the 12 steps to Navier-Stokes equations. Journal of Open Sour
Ejemplo Algoritmo Viterbi - Example of a Viterbi algorithm applied to a hidden Markov model on DNA sequence
Ejemplo Algoritmo Viterbi Ejemplo de un algoritmo Viterbi aplicado a modelo ocul
Research into Forex price prediction from price history using Deep Sequence Modeling with Stacked LSTMs.
Forex Data Prediction via Recurrent Neural Network Deep Sequence Modeling Research Paper Our research paper can be viewed here Installation Clone the
Simulate genealogical trees and genomic sequence data using population genetic models
msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consis
Seq2seq - Sequence to Sequence Learning with Keras
Seq2seq Sequence to Sequence Learning with Keras Hi! You have just found Seq2Seq. Seq2Seq is a sequence to sequence learning add-on for the python dee
Implementation of ICLR 2020 paper "Revisiting Self-Training for Neural Sequence Generation"
Self-Training for Neural Sequence Generation This repo includes instructions for running noisy self-training algorithms from the following paper: Revi
Neural network sequence labeling model
Sequence labeler This is a neural network sequence labeling system. Given a sequence of tokens, it will learn to assign labels to each token. Can be u
Bidirectionally transformed strings
bistring The bistring library provides non-destructive versions of common string processing operations like normalization, case folding, and find/repl
This program analyzes a DNA sequence and outputs snippets of DNA that are likely to be protein-coding genes.
This program analyzes a DNA sequence and outputs snippets of DNA that are likely to be protein-coding genes.
Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type)
(intron I nterrogator and C lassifier) intronIC is a program that can be used to classify intron sequences as minor (U12-type) or major (U2-type), usi
An easy to use GUI based video to image sequence converter (and vice versa).
Vdo & Img Conversion Tools This is a quick conversion tool made with python that can save you a lot of time. With this tool you can extract image sequ
Sequence lineage information extracted from RKI sequence data repo
Pango lineage information for German SARS-CoV-2 sequences This repository contains a join of the metadata and pango lineage tables of all German SARS-
A toolkit to generate MR sequence diagrams
mrsd: a toolkit to generate MR sequence diagrams mrsd is a Python toolkit to generate MR sequence diagrams, as shown below for the basic FLASH sequenc
Gaphas is the diagramming widget library for Python.
Gaphas Gaphas is the diagramming widget library for Python. Gaphas is a library that provides the user interface component (widget) for drawing diagra
These are the scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel structural variation, providing new insights into their diversity and evolution history’
script-SV-genotyping These are the scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel stru
PcapXray - A Network Forensics Tool - To visualize a Packet Capture offline as a Network Diagram
PcapXray - A Network Forensics Tool - To visualize a Packet Capture offline as a Network Diagram including device identification, highlight important communication and file extraction
A Japanese tokenizer based on recurrent neural networks
Nagisa is a python module for Japanese word segmentation/POS-tagging. It is designed to be a simple and easy-to-use tool. This tool has the following
BARTpho: Pre-trained Sequence-to-Sequence Models for Vietnamese
Table of contents Introduction Using BARTpho with fairseq Using BARTpho with transformers Notes BARTpho: Pre-trained Sequence-to-Sequence Models for V
Tensorflow Implementation of ECCV'18 paper: Multimodal Human Motion Synthesis
MT-VAE for Multimodal Human Motion Synthesis This is the code for ECCV 2018 paper MT-VAE: Learning Motion Transformations to Generate Multimodal Human
"Learning and Analyzing Generation Order for Undirected Sequence Models" in Findings of EMNLP, 2021
undirected-generation-dev This repo contains the source code of the models described in the following paper "Learning and Analyzing Generation Order f
SeqLike - flexible biological sequence objects in Python
SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more
Pre-training with Extracted Gap-sentences for Abstractive SUmmarization Sequence-to-sequence models
PEGASUS library Pre-training with Extracted Gap-sentences for Abstractive SUmmarization Sequence-to-sequence models, or PEGASUS, uses self-supervised
Code for EMNLP20 paper: "ProphetNet: Predicting Future N-gram for Sequence-to-Sequence Pre-training"
ProphetNet-X This repo provides the code for reproducing the experiments in ProphetNet. In the paper, we propose a new pre-trained language model call
A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files.
ObjSequenceViewer V0.5 A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files. Installation: pip
A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics, sequence features, and user profiles.
CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,
Data pipelines for both TensorFlow and PyTorch!
rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets
Simple, high-school-leveled sequence library written in Python / 간단한 고등학교 수준 수열 라이브러리 (Python)
Simple, high-school-leveled sequence library written in Python
Tensorflow implementation of Semi-supervised Sequence Learning (https://arxiv.org/abs/1511.01432)
Transfer Learning for Text Classification with Tensorflow Tensorflow implementation of Semi-supervised Sequence Learning(https://arxiv.org/abs/1511.01
PyTorch trainer and model for Sequence Classification
PyTorch-trainer-and-model-for-Sequence-Classification After cloning the repository, modify your training data so that the training data is a .csv file
Training and evaluation codes for the BertGen paper (ACL-IJCNLP 2021)
BERTGEN This repository is the implementation of the paper "BERTGEN: Multi-task Generation through BERT" (https://arxiv.org/abs/2106.03484). The codeb
A Pythonic framework for threat modeling
pytm: A Pythonic framework for threat modeling Introduction Traditional threat modeling too often comes late to the party, or sometimes not at all. In
Equivariant layers for RC-complement symmetry in DNA sequence data
Equi-RC Equivariant layers for RC-complement symmetry in DNA sequence data This is a repository that implements the layers as described in "Reverse-Co
Parallel Latent Tree-Induction for Faster Sequence Encoding
FastTrees This repository contains the experimental code supporting the FastTrees paper by Bill Pung. Software Requirements Python 3.6, NLTK and PyTor
Sequence clustering and database creation using mmseqs, from local fasta files
Sequence clustering and database creation using mmseqs, from local fasta files
A package to predict protein inter-residue geometries from sequence data
trRosetta This package is a part of trRosetta protein structure prediction protocol developed in: Improved protein structure prediction using predicte
Area-weighted venn-diagrams for Python/matplotlib
Venn diagram plotting routines for Python/Matplotlib Routines for plotting area-weighted two- and three-circle venn diagrams. Installation The simples
Code for the paper "Offline Reinforcement Learning as One Big Sequence Modeling Problem"
Trajectory Transformer Code release for Offline Reinforcement Learning as One Big Sequence Modeling Problem. Installation All python dependencies are
Implementation of Sequence Generative Adversarial Nets with Policy Gradient
SeqGAN Requirements: Tensorflow r1.0.1 Python 2.7 CUDA 7.5+ (For GPU) Introduction Apply Generative Adversarial Nets to generating sequences of discre
ReGAN: Sequence GAN using RE[INFORCE|LAX|BAR] based PG estimators
Sequence Generation with GANs trained by Gradient Estimation Requirements: PyTorch v0.3 Python 3.6 CUDA 9.1 (For GPU) Origin The idea is from paper Se
Sequence to Sequence (seq2seq) Recurrent Neural Network (RNN) for Time Series Forecasting
Sequence to Sequence (seq2seq) Recurrent Neural Network (RNN) for Time Series Forecasting Note: You can find here the accompanying seq2seq RNN forecas
An implementation of a sequence to sequence neural network using an encoder-decoder
Keras implementation of a sequence to sequence model for time series prediction using an encoder-decoder architecture. I created this post to share a
A socket script to obtain chinese phones-sequence for any english word
Foreign Pronunciation Generator (English-Chinese) We provide a simple socket script for acquiring Chinese pronunciation of English words (phones in ai
The Spectral Diagram (SD) is a new tool for the comparison of time series in the frequency domain
The Spectral Diagram (SD) is a new tool for the comparison of time series in the frequency domain. The SD provides a novel way to display the coherence function, power, amplitude, phase, and skill score of discrete frequencies of two time series. Each SD summarises these quantities in a single plot for multiple targeted frequencies.
Implementation of H-Transformer-1D, Hierarchical Attention for Sequence Learning using 🤗 transformers
hierarchical-transformer-1d Implementation of H-Transformer-1D, Hierarchical Attention for Sequence Learning using 🤗 transformers In Progress!! 2021.
Pulse sequence builder and compiler for q1asm
q1pulse Pulse sequence builder and compiler for q1asm. q1pulse is a simple library to compile pulse sequence to q1asm, the assembly language of Qblox
This repo holds codes of the ICCV21 paper: Visual Alignment Constraint for Continuous Sign Language Recognition.
VAC_CSLR This repo holds codes of the paper: Visual Alignment Constraint for Continuous Sign Language Recognition.(ICCV 2021) [paper] Prerequisites Th
Sequence Modeling with Structured State Spaces
Structured State Spaces for Sequence Modeling This repository provides implementations and experiments for the following papers. S4 Efficiently Modeli
Sequence Modeling with Structured State Spaces
Structured State Spaces for Sequence Modeling This repository provides implementations and experiments for the following papers. S4 Efficiently Modeli
A modular, research-friendly framework for high-performance and inference of sequence models at many scales
T5X T5X is a modular, composable, research-friendly framework for high-performance, configurable, self-service training, evaluation, and inference of
A PyTorch Implementation of Gated Graph Sequence Neural Networks (GGNN)
A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G
Code for Generating Disentangled Arguments with Prompts: A Simple Event Extraction Framework that Works
GDAP Code for Generating Disentangled Arguments with Prompts: A Simple Event Extraction Framework that Works Environment Python (verified: v3.8) CUDA
Convolutional Recurrent Neural Network (CRNN) for image-based sequence recognition.
Convolutional Recurrent Neural Network This software implements the Convolutional Recurrent Neural Network (CRNN), a combination of CNN, RNN and CTC l
2021 CCF BDCI 全国信息检索挑战杯(CCIR-Cup)智能人机交互自然语言理解赛道第二名参赛解决方案
2021 CCF BDCI 全国信息检索挑战杯(CCIR-Cup) 智能人机交互自然语言理解赛道第二名解决方案 比赛网址: CCIR-Cup-智能人机交互自然语言理解 1.依赖环境: python==3.8 torch==1.7.1+cu110 numpy==1.19.2 transformers=
This repository includes the code of the sequence-to-sequence model for discontinuous constituent parsing described in paper Discontinuous Grammar as a Foreign Language.
Discontinuous Grammar as a Foreign Language This repository includes the code of the sequence-to-sequence model for discontinuous constituent parsing
An End-to-End Trainable Neural Network for Image-based Sequence Recognition and Its Application to Scene Text Recognition
CRNN paper:An End-to-End Trainable Neural Network for Image-based Sequence Recognition and Its Application to Scene Text Recognition 1. create your ow
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language mod
A graph-to-sequence model for one-step retrosynthesis and reaction outcome prediction.
Graph2SMILES A graph-to-sequence model for one-step retrosynthesis and reaction outcome prediction. 1. Environmental setup System requirements Ubuntu:
Source code for CAST - Crisis Domain Adaptation Using Sequence-to-sequence Transformers (Accepted to ISCRAM 2021, CorePaper).
Source code for CAST: Crisis Domain Adaptation UsingSequence-to-sequenceTransformers (Paper, BibTeX, Accepted to ISCRAM 2021, CorePaper) Quick start D
Repository sharing code and the model for the paper "Rescoring Sequence-to-Sequence Models for Text Line Recognition with CTC-Prefixes"
Rescoring Sequence-to-Sequence Models for Text Line Recognition with CTC-Prefixes Setup virtualenv -p python3 venv source venv/bin/activate pip instal
ULMFiT for Genomic Sequence Data
Genomic ULMFiT This is an implementation of ULMFiT for genomics classification using Pytorch and Fastai. The model architecture used is based on the A
Interactive Terraform visualization. State and configuration explorer.
Rover - Terraform Visualizer Rover is a Terraform visualizer. In order to do this, Rover: generates a plan file and parses the configuration in the ro
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch
Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo
WRENCH: Weak supeRvision bENCHmark
🔧 What is it? Wrench is a benchmark platform containing diverse weak supervision tasks. It also provides a common and easy framework for development
Lingvo is a framework for building neural networks in Tensorflow, particularly sequence models.
Lingvo is a framework for building neural networks in Tensorflow, particularly sequence models.
[ICLR'19] Trellis Networks for Sequence Modeling
TrellisNet for Sequence Modeling This repository contains the experiments done in paper Trellis Networks for Sequence Modeling by Shaojie Bai, J. Zico
Pervasive Attention: 2D Convolutional Networks for Sequence-to-Sequence Prediction
This is a fork of Fairseq(-py) with implementations of the following models: Pervasive Attention - 2D Convolutional Neural Networks for Sequence-to-Se
A Fast Sequence Transducer Implementation with PyTorch Bindings
transducer A Fast Sequence Transducer Implementation with PyTorch Bindings. The corresponding publication is Sequence Transduction with Recurrent Neur
Sequence modeling benchmarks and temporal convolutional networks
Sequence Modeling Benchmarks and Temporal Convolutional Networks (TCN) This repository contains the experiments done in the work An Empirical Evaluati
The GitHub repository for the paper: “Time Series is a Special Sequence: Forecasting with Sample Convolution and Interaction“.
SCINet This is the original PyTorch implementation of the following work: Time Series is a Special Sequence: Forecasting with Sample Convolution and I
Sequence-to-Sequence learning using PyTorch
Seq2Seq in PyTorch This is a complete suite for training sequence-to-sequence models in PyTorch. It consists of several models and code to both train
Sequence to Sequence Models with PyTorch
Sequence to Sequence models with PyTorch This repository contains implementations of Sequence to Sequence (Seq2Seq) models in PyTorch At present it ha
Supervised Contrastive Learning for Downstream Optimized Sequence Representations
SupCL-Seq 📖 Supervised Contrastive Learning for Downstream Optimized Sequence representations (SupCS-Seq) accepted to be published in EMNLP 2021, ext