Python Sequence-labeling Resources

LG-AI-Challenge-for-Plant-Classification Dacon에서 진행된 농업 환경 변화에 따른 작물 병해 진단 AI 경진대회 에 대한 코드입니다. (colab directory에 코드가 잘 정리 되어있습니다.) Requirements python

rich-msa A simple module to render colorful Multiple Sequence Alignment with rich in the terminal. 🔧 Installing Install the rich-msa package directly

Paper | Blog OFA is a unified multimodal pretrained model that unifies modalities (i.e., cross-modality, vision, language) and tasks (e.g., image gene

Behavior-Sequence-Transformer-Pytorch This is a pytorch implementation for the BST model from Alibaba https://arxiv.org/pdf/1905.06874.pdf This model

PromptDet: Expand Your Detector Vocabulary with Uncurated Images Paper Website Introduction The goal of this work is to establish a scalable pipeline

Description: ProtFeat is designed to extract the protein features by employing POSSUM and iFeature python-based tools. ProtFeat includes a total of 39

Fibonaaci Series Generating the Fibonacci sequence is a classic recursive proble

Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework

Minimal implementation of Decision Transformer: Reinforcement Learning via Sequence Modeling in PyTorch for mujoco control tasks in OpenAI gym

Crowd-Kit: Computational Quality Control for Crowdsourcing Documentation Crowd-Kit is a powerful Python library that implements commonly-used aggregat

DNA sequence classification by Deep Neural Network: Project Overview worked on the DNA sequence classification problem where the input is the DNA sequ

Regression Transformer Codebase to experiment with a hybrid Transformer that combines conditional sequence generation with regression . Development se

Classification using Deep Learning Requirements PyTorch version = 1.9.1+cu111 Python version = 3.8.10 PyTorch-Lightning version = 1.4.9 Huggingface

Clothing Co-Parsing (CCP) Dataset Clothing Co-Parsing (CCP) dataset is a new clothing database including elaborately annotated clothing items. 2, 098

En- and decrypting text-messages by creating a key with of the fibonacci-sequence. This key helps to create mathematical functions, whose zeros should generates the encrypted message.

Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification Introduction. This package includes the pyth

Iterative refinement graph neural network for antibody sequence-structure co-des

Diaformer Diaformer: Automatic Diagnosis via Symptoms Sequence Generation (AAAI 2022) Diaformer is an efficient model for automatic diagnosis via symp

CAST: Character labeling in Animation using Self-supervision by Tracking (Published as a conference paper at EuroGraphics 2022) Note: The CAST paper c

This repository contains a toolkit for collecting, labeling and tracking object keypoints. Object keypoints are semantic points in an object's coordinate frame.

NaturalCC NaturalCC is a sequence modeling toolkit that allows researchers and developers to train custom models for many software engineering tasks,

JASS: Japanese-specific Sequence to Sequence Pre-training for Neural Machine Translation This the repository for this paper. Find extensions of this w

ReLSO Improved Fitness Optimization Landscapes for Sequence Design Description Citation How to run Training models Original data source Description In

Sequence-Labeling-Early-Exit Code for ACL 2021 paper: Accelerating BERT Inference for Sequence Labeling via Early-Exit Requirement: Please refer to re

pyspark_sam This repo hosts my code for the article "Analyze Big Sequence Alignm

Labelbox Labelbox is the fastest way to annotate data to build and ship artificial intelligence applications. Use this github repository to help you s

Computer Vision Annotation Tool (CVAT) CVAT is free, online, interactive video and image annotation tool for computer vision. It is being used by our

sequitur sequitur is a library that lets you create and train an autoencoder for sequential data in just two lines of code. It implements three differ

ParaGen is a PyTorch deep learning framework for parallel sequence generation. Apart from sequence generation, ParaGen also enhances various NLP tasks, including sequence-level classification, extraction and generation.

Algorithms Classic algorithms including Fizz Buzz, Bubble Sort, the Fibonacci Sequence, a Sudoku solver, and more. Algorithm Complexity Time and Space

Overview This repository provides the implementation for the paper "Improved Regularization and Robustness for Fine-tuning in Neural Networks", which

CFD Python Please cite as: Barba, Lorena A., and Forsyth, Gilbert F. (2018). CFD Python: the 12 steps to Navier-Stokes equations. Journal of Open Sour

Ejemplo Algoritmo Viterbi Ejemplo de un algoritmo Viterbi aplicado a modelo ocul

Auto Label Pipeline A practical ML pipeline for data labeling with experiment tracking using DVC Goals: Demonstrate reproducible ML Use DVC to build a

Forex Data Prediction via Recurrent Neural Network Deep Sequence Modeling Research Paper Our research paper can be viewed here Installation Clone the

taganomaly Anomaly detection labeling tool, specifically for multiple time series (one time series per category). Taganomaly is a tool for creating la

msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consis

Seq2seq Sequence to Sequence Learning with Keras Hi! You have just found Seq2Seq. Seq2Seq is a sequence to sequence learning add-on for the python dee

Self-Training for Neural Sequence Generation This repo includes instructions for running noisy self-training algorithms from the following paper: Revi

Sequence labeler This is a neural network sequence labeling system. Given a sequence of tokens, it will learn to assign labels to each token. Can be u

bistring The bistring library provides non-destructive versions of common string processing operations like normalization, case folding, and find/repl

This program analyzes a DNA sequence and outputs snippets of DNA that are likely to be protein-coding genes.

(intron I nterrogator and C lassifier) intronIC is a program that can be used to classify intron sequences as minor (U12-type) or major (U2-type), usi

Vdo & Img Conversion Tools This is a quick conversion tool made with python that can save you a lot of time. With this tool you can extract image sequ

Pango lineage information for German SARS-CoV-2 sequences This repository contains a join of the metadata and pango lineage tables of all German SARS-

mrsd: a toolkit to generate MR sequence diagrams mrsd is a Python toolkit to generate MR sequence diagrams, as shown below for the basic FLASH sequenc

script-SV-genotyping These are the scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel stru

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

Nagisa is a python module for Japanese word segmentation/POS-tagging. It is designed to be a simple and easy-to-use tool. This tool has the following

Record radiologists' eye gaze when they are labeling images. Read for installation, usage, and deep learning examples. Why use MicEye Versatile As a l

Simple Gadget Collection for Object Detection Tasks Automatic image annotation Conversion between different annotation formats Obtain statistical info

Table of contents Introduction Using BARTpho with fairseq Using BARTpho with transformers Notes BARTpho: Pre-trained Sequence-to-Sequence Models for V

HyperGBM Doc | 中文 We Are Hiring！ Dear folks,we are offering challenging opportunities located in Beijing for both professionals and students who are k

GGHL: A General Gaussian Heatmap Labeling for Arbitrary-Oriented Object Detection This is the implementation of GGHL 👋 👋 👋 [Arxiv] [Google Drive][B

MT-VAE for Multimodal Human Motion Synthesis This is the code for ECCV 2018 paper MT-VAE: Learning Motion Transformations to Generate Multimodal Human

undirected-generation-dev This repo contains the source code of the models described in the following paper "Learning and Analyzing Generation Order f

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

Label Studio for Hugging Face's Transformers Website • Docs • Twitter • Join Slack Community Transfer learning for NLP models by annotating your textu

PEGASUS library Pre-training with Extracted Gap-sentences for Abstractive SUmmarization Sequence-to-sequence models, or PEGASUS, uses self-supervised

ProphetNet-X This repo provides the code for reproducing the experiments in ProphetNet. In the paper, we propose a new pre-trained language model call

Semi-Supervised Data Programming for Data Efficient Machine Learning SPEAR is a library for data programming with semi-supervision. The package implem

Bayesian Active Learning (BaaL) BaaL is an active learning library developed at ElementAI. This repository contains techniques and reusable components

ObjSequenceViewer V0.5 A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files. Installation: pip

Programmatically Build and Manage Training Data Announcement The Snorkel team is now focusing their efforts on Snorkel Flow, an end-to-end AI applicat

PyLabel pip install pylabel PyLabel is a Python package to help you prepare image datasets for computer vision models including PyTorch and YOLOv5. I

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets

Simple, high-school-leveled sequence library written in Python

Transfer Learning for Text Classification with Tensorflow Tensorflow implementation of Semi-supervised Sequence Learning(https://arxiv.org/abs/1511.01

Curve Sorry to tell contributors and users. We decided to archive the project temporarily due to the employee work plan of collaborators. There are no

PyTorch-trainer-and-model-for-Sequence-Classification After cloning the repository, modify your training data so that the training data is a .csv file

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

DISTIL: Deep dIverSified inTeractIve Learning. An active/inter-active learning library built on py-torch for reducing labeling costs.

BERTGEN This repository is the implementation of the paper "BERTGEN: Multi-task Generation through BERT" (https://arxiv.org/abs/2106.03484). The codeb

Website • Docs • Twitter • Join Slack Community What is Label Studio? Label Studio is an open source data labeling tool. It lets you label data types

pytm: A Pythonic framework for threat modeling Introduction Traditional threat modeling too often comes late to the party, or sometimes not at all. In

Equi-RC Equivariant layers for RC-complement symmetry in DNA sequence data This is a repository that implements the layers as described in "Reverse-Co

FastTrees This repository contains the experimental code supporting the FastTrees paper by Bill Pung. Software Requirements Python 3.6, NLTK and PyTor

Sequence clustering and database creation using mmseqs, from local fasta files

Welcome to labelpix 👋 labelpix is a graphical image labeling interface for drawing bounding boxes. 🏠 Homepage Install pip install -r requirements.tx

Code for "Semantic Role Labeling as Dependency Parsing: Exploring Latent Tree Structures Inside Arguments".

Constituency Tree Labeling Tool The purpose of this package is to solve the constituency tree labeling problem. Look from the dataset labeled by NLTK,

trRosetta This package is a part of trRosetta protein structure prediction protocol developed in: Improved protein structure prediction using predicte

Trajectory Transformer Code release for Offline Reinforcement Learning as One Big Sequence Modeling Problem. Installation All python dependencies are

SeqGAN Requirements: Tensorflow r1.0.1 Python 2.7 CUDA 7.5+ (For GPU) Introduction Apply Generative Adversarial Nets to generating sequences of discre

Sequence Generation with GANs trained by Gradient Estimation Requirements: PyTorch v0.3 Python 3.6 CUDA 9.1 (For GPU) Origin The idea is from paper Se

Computer Vision Annotation Tool (CVAT) CVAT is free, online, interactive video and image annotation tool for computer vision. It is being used by our

Sequence to Sequence (seq2seq) Recurrent Neural Network (RNN) for Time Series Forecasting Note: You can find here the accompanying seq2seq RNN forecas

Keras implementation of a sequence to sequence model for time series prediction using an encoder-decoder architecture. I created this post to share a

Foreign Pronunciation Generator (English-Chinese) We provide a simple socket script for acquiring Chinese pronunciation of English words (phones in ai

PSLA: Improving Audio Tagging with Pretraining, Sampling, Labeling, and Aggregation Introduction Getting Started FSD50K Recipe AudioSet Recipe Label E

hierarchical-transformer-1d Implementation of H-Transformer-1D, Hierarchical Attention for Sequence Learning using 🤗 transformers In Progress!! 2021.

q1pulse Pulse sequence builder and compiler for q1asm. q1pulse is a simple library to compile pulse sequence to q1asm, the assembly language of Qblox

Overview This repository provides the implementation for the paper "Improved Regularization and Robustness for Fine-tuning in Neural Networks", which

VAC_CSLR This repo holds codes of the paper: Visual Alignment Constraint for Continuous Sign Language Recognition.(ICCV 2021) [paper] Prerequisites Th

Structured State Spaces for Sequence Modeling This repository provides implementations and experiments for the following papers. S4 Efficiently Modeli

Structured State Spaces for Sequence Modeling This repository provides implementations and experiments for the following papers. S4 Efficiently Modeli

T5X T5X is a modular, composable, research-friendly framework for high-performance, configurable, self-service training, evaluation, and inference of

mpl-image-labeller Use Matplotlib to label images for classification. Works anywhere Matplotlib does - from the notebook to a standalone gui! For more

A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G