Python Sequence-to-tree Resources

DEEP LEARNING FOR CODERS WITH FASTAI AND PYTORCH The repository contains a list of the projects which I have worked on while reading the book Deep Lea

Computational Xmas Tree This repo contains the code for the computational illumination of a Christmas Tree! It is based on the work by Matt Parker fro

Python Decision Tree and Random Forest Decision Tree A Decision Tree is one of the popular and powerful machine learning algorithms that I have learne

skillmap A tool for generating skill map/tree like diagram. What is a skill map/tree? Skill tree is a term used in video games, and it can be used for

LG-AI-Challenge-for-Plant-Classification Dacon에서 진행된 농업 환경 변화에 따른 작물 병해 진단 AI 경진대회 에 대한 코드입니다. (colab directory에 코드가 잘 정리 되어있습니다.) Requirements python

rich-msa A simple module to render colorful Multiple Sequence Alignment with rich in the terminal. 🔧 Installing Install the rich-msa package directly

Paper | Blog OFA is a unified multimodal pretrained model that unifies modalities (i.e., cross-modality, vision, language) and tasks (e.g., image gene

Behavior-Sequence-Transformer-Pytorch This is a pytorch implementation for the BST model from Alibaba https://arxiv.org/pdf/1905.06874.pdf This model

FastTreeSHAP FastTreeSHAP package is built based on the paper Fast TreeSHAP: Accelerating SHAP Value Computation for Trees published in NeurIPS 2021 X

Description: ProtFeat is designed to extract the protein features by employing POSSUM and iFeature python-based tools. ProtFeat includes a total of 39

GBIF-biodiverse-OpenTree Linking data between GBIF, Biodiverse, and Open Tree of Life The python scripts will rely on opentree and Dendropy. To set up

Fibonaaci Series Generating the Fibonacci sequence is a classic recursive proble

Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework

Minimal implementation of Decision Transformer: Reinforcement Learning via Sequence Modeling in PyTorch for mujoco control tasks in OpenAI gym

Python red-black trees A Python implementation of red-black trees. This code was originally copied from programiz.com, but I have made a few tweaks to

Python package for concise, transparent, and accurate predictive modeling. All sklearn-compatible and easy to use. 📚 docs • 📖 demo notebooks Modern

DNA sequence classification by Deep Neural Network: Project Overview worked on the DNA sequence classification problem where the input is the DNA sequ

Regression Transformer Codebase to experiment with a hybrid Transformer that combines conditional sequence generation with regression . Development se

Classification using Deep Learning Requirements PyTorch version = 1.9.1+cu111 Python version = 3.8.10 PyTorch-Lightning version = 1.4.9 Huggingface

En- and decrypting text-messages by creating a key with of the fibonacci-sequence. This key helps to create mathematical functions, whose zeros should generates the encrypted message.

Temporal Alignment Prediction for Supervised Representation Learning and Few-Shot Sequence Classification Introduction. This package includes the pyth

Iterative refinement graph neural network for antibody sequence-structure co-des

Hatchet Hatchet is a Python-based library that allows Pandas dataframes to be indexed by structured tree and graph data. It is intended for analyzing

scrapy-folder-tree This is a scrapy pipeline that provides an easy way to store files and images using various folder structures. Supported folder str

Diaformer Diaformer: Automatic Diagnosis via Symptoms Sequence Generation (AAAI 2022) Diaformer is an efficient model for automatic diagnosis via symp

README This code implements constituency parse tree aggregation. Folder details code: This folder contains the code that implements constituency parse

NaturalCC NaturalCC is a sequence modeling toolkit that allows researchers and developers to train custom models for many software engineering tasks,

JASS: Japanese-specific Sequence to Sequence Pre-training for Neural Machine Translation This the repository for this paper. Find extensions of this w

ReLSO Improved Fitness Optimization Landscapes for Sequence Design Description Citation How to run Training models Original data source Description In

Sequence-Labeling-Early-Exit Code for ACL 2021 paper: Accelerating BERT Inference for Sequence Labeling via Early-Exit Requirement: Please refer to re

pyspark_sam This repo hosts my code for the article "Analyze Big Sequence Alignm

bspcq, q for query A bspc analyzer (utility for bspwm) This is a small program that prints a user friendly, visual representation, of your current bsp

Diabetes Prediction Using Decision Tree Introduction Decision tree is the most powerful and popular tool for classification and prediction. A Decision

sequitur sequitur is a library that lets you create and train an autoencoder for sequential data in just two lines of code. It implements three differ

DI-treetensor treetensor is a generalized tree-based tensor structure mainly developed by OpenDILab Contributors. Almost all the operation can be supp

implementation of machine learning Algorithms such as decision tree and random forest and xgboost on darasets then compare results for each and implement ant colony and genetic algorithms on tsp map, play blackjack game and robot in grid world and evaluate reward for it

ParaGen is a PyTorch deep learning framework for parallel sequence generation. Apart from sequence generation, ParaGen also enhances various NLP tasks, including sequence-level classification, extraction and generation.

ML_Model_implementaion Implementation of ML models like Decision tree, Naive Bayes, Logistic Regression and many other dectree_model: Implementation o

LA-MCTS The code is based of paper Learning Search Space Partition for Black-box Optimization using Monte Carlo Tree Search. Component LA-MCTS has thr

TBSG: Tree-based Search Graph for Approximate Nearest Neighbor Search. TBSG is a graph-based algorithm for ANNS based on Cover Tree, which is also an

Algorithms Classic algorithms including Fizz Buzz, Bubble Sort, the Fibonacci Sequence, a Sudoku solver, and more. Algorithm Complexity Time and Space

link-tree Script that iterate over the links found in each page, recursively fin

🛬 Token Drop Template This is a template to perform token drops efficiently on Tezos blockchain. The drop is handled using Merkle Tree Distribution m

CFD Python Please cite as: Barba, Lorena A., and Forsyth, Gilbert F. (2018). CFD Python: the 12 steps to Navier-Stokes equations. Journal of Open Sour

Ejemplo Algoritmo Viterbi Ejemplo de un algoritmo Viterbi aplicado a modelo ocul

Forex Data Prediction via Recurrent Neural Network Deep Sequence Modeling Research Paper Our research paper can be viewed here Installation Clone the

Hands-on Algorithmic Problem Solving A one-stop coding interview prep book! About this book In short, this is a middle-to-high level algorithm book de

STM32MP1 Buildroot External Tree

msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consis

Seq2seq Sequence to Sequence Learning with Keras Hi! You have just found Seq2Seq. Seq2Seq is a sequence to sequence learning add-on for the python dee

A Tour in the Wonderland of Math with Python A collection of python scripts for drawing beautiful figures and animating interesting algorithms in math

This repo is made to participate in Matt Parker's XmasTree 2021 event. Convert a

Self-Training for Neural Sequence Generation This repo includes instructions for running noisy self-training algorithms from the following paper: Revi

Sequence labeler This is a neural network sequence labeling system. Given a sequence of tokens, it will learn to assign labels to each token. Can be u

tree-math: mathematical operations for JAX pytrees tree-math makes it easy to implement numerical algorithms that work on JAX pytrees, such as iterati

ctree ctree - command line christmas tree It is small python script that prints a christmas tree in terminal. It is colourful and always gives you a d

bistring The bistring library provides non-destructive versions of common string processing operations like normalization, case folding, and find/repl

new-year-tree Christmas tree on the desktop. [Ссылка на статью habr]

This program analyzes a DNA sequence and outputs snippets of DNA that are likely to be protein-coding genes.

(intron I nterrogator and C lassifier) intronIC is a program that can be used to classify intron sequences as minor (U12-type) or major (U2-type), usi

Christmas Tree Visualizer A python wrapper for creating and viewing effects for Matt Parker's christmas tree. Displays py or csv effect files and allo

Esse projeto foi feito em Python com, intuito de fortificar meu aprendizado de programação. Sobre • Tecnologias • Pré Requisitos • Licença • Autor 📄

Vdo & Img Conversion Tools This is a quick conversion tool made with python that can save you a lot of time. With this tool you can extract image sequ

Pango lineage information for German SARS-CoV-2 sequences This repository contains a join of the metadata and pango lineage tables of all German SARS-

django-treenode Probably the best abstract model / admin for your tree based stuff. Features Fast - get ancestors, children, descendants, parent, root

xmastree2021 Code and coordinates for Matt's 2021 xmas tree This repository contains the code and coordinates used for Matt's 2021 Christmas tree, as

Implemented four supervised learning Machine Learning algorithms from an algorithmic family called Classification and Regression Trees (CARTs), details see README_Report.

mrsd: a toolkit to generate MR sequence diagrams mrsd is a Python toolkit to generate MR sequence diagrams, as shown below for the basic FLASH sequenc

Decision_Tree_Regression I implemented the decision tree regression algorithm on Python. Unlike regular linear regression, this algorithm is used when

script-SV-genotyping These are the scripts used for the project of ‘Assembly of a pan-genome for global cattle reveals missing sequence and novel stru

Nagisa is a python module for Japanese word segmentation/POS-tagging. It is designed to be a simple and easy-to-use tool. This tool has the following

Table of contents Introduction Using BARTpho with fairseq Using BARTpho with transformers Notes BARTpho: Pre-trained Sequence-to-Sequence Models for V

MT-VAE for Multimodal Human Motion Synthesis This is the code for ECCV 2018 paper MT-VAE: Learning Motion Transformations to Generate Multimodal Human

undirected-generation-dev This repo contains the source code of the models described in the following paper "Learning and Analyzing Generation Order f

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

PEGASUS library Pre-training with Extracted Gap-sentences for Abstractive SUmmarization Sequence-to-sequence models, or PEGASUS, uses self-supervised

ProphetNet-X This repo provides the code for reproducing the experiments in ProphetNet. In the paper, we propose a new pre-trained language model call

ST Algorithm Programming of a spanning tree algorithm with Python : In depth first with a root node. Description This programm reads informations abou

Learning-Augmented Algorithms for Online Steiner Tree This is the code for the paper "Learning-Augmented Algorithms for Online Steiner Tree". Requirem

ObjSequenceViewer V0.5 A minimal, standalone viewer for 3D animations stored as stop-motion sequences of individual .obj mesh files. Installation: pip

Links Documentation PyPI GitHub Changelog Issues Contributors If you enjoy anytree Getting started Usage is simple. Construction from anytree impo

Tree-Traversals (BST) 🌲 A simple BST (Binary Search Tree) generator written in python Installation Use the package manager pip to install BST. Usage

DeepDiff v 5.6.0 DeepDiff Overview DeepDiff: Deep Difference of dictionaries, iterables, strings and other objects. It will recursively look for all t

SeBoW: Self-Born Wiring for neural trees(PaddlePaddle version) This is the paddle code for SeBoW(Self-Born wiring for neural trees), a kind of neural

Junction Tree Variational Autoencoder for Molecular Graph Generation Official implementation of our Junction Tree Variational Autoencoder https://arxi

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets

CTO (Call Tree Overviewer) CTO (Call Tree Overviewer) is an IDA plugin for creating a simple and efficiant function call tree graph. It can also summa

Simple, high-school-leveled sequence library written in Python

Transfer Learning for Text Classification with Tensorflow Tensorflow implementation of Semi-supervised Sequence Learning(https://arxiv.org/abs/1511.01

TREE HEIGHT EXTRACTION IN SPARSE SCENES BASED ON UAV REMOTE SENSING This is the offical python implementation of the paper "Tree Height Extraction in

PyTorch-trainer-and-model-for-Sequence-Classification After cloning the repository, modify your training data so that the training data is a .csv file

BERTGEN This repository is the implementation of the paper "BERTGEN: Multi-task Generation through BERT" (https://arxiv.org/abs/2106.03484). The codeb

A simple tutorial to use py-tree-sitter to parse code into ASTs. To understand what is tree-sitter, see https://github.com/tree-sitter/tree-sitter. Tr

pytm: A Pythonic framework for threat modeling Introduction Traditional threat modeling too often comes late to the party, or sometimes not at all. In

This is an official Pytorch implementation of the approaches proposed in: Han Peng, Ge Li, Wenhan Wang, Yunfei Zhao, Zhi Jin “Integrating Tree Path in

Code for "Solving Graph-based Public Good Games with Tree Search and Imitation Learning" This is the code for the paper Solving Graph-based Public Goo

Equi-RC Equivariant layers for RC-complement symmetry in DNA sequence data This is a repository that implements the layers as described in "Reverse-Co

FastTrees This repository contains the experimental code supporting the FastTrees paper by Bill Pung. Software Requirements Python 3.6, NLTK and PyTor

Sequence clustering and database creation using mmseqs, from local fasta files