Python Systems-biology Resources

HETU Documentation | Examples Hetu is a high-performance distributed deep learning system targeting trillions of parameters DL model training, develop

FuxiCTR This repo is the community dev version of the official release at huawei-noah/benchmark/FuxiCTR. Click-through rate (CTR) prediction is an cri

A repository built on the Flow software package to explore cyber-security attacks on intelligent transportation systems.

Cylc: a workflow engine for cycling systems. Repository master branch: core meta-scheduler component of cylc-8 (in development); Repository 7.8.x branch: full cylc-7 system.

Jiminy is a fast and portable cross-platform open-source simulator for poly-articulated systems. It was built with two ideas in mind: provide a fast y

PixMix Introduction In real-world applications of machine learning, reliable and safe systems must consider measures of performance beyond standard te

Pachyderm: The Data Foundation for Machine Learning Pachyderm provides the data layer that allows machine learning teams to productionize and scale th

Complex Answer Generation For Conversational Search Systems. Code for Does Structure Matter? Leveraging Data-to-Text Generation for Answering Complex

Bayesian Deep Learning for Manufacturing 2.0 (dlmfg) Object Shape Error Response (OSER) Digital Lifecycle Management - In Process Quality Improvement

Adversarial Differentiable Data Augmentation This repository provides the official PyTorch implementation of the ICRA 2021 paper: Adversarial Differen

recmetrics A python library of evalulation metrics and diagnostic tools for recommender systems. **This library is activly maintained. My goal is to c

TorchRec (Experimental Release) TorchRec is a PyTorch domain library built to provide common sparsity & parallelism primitives needed for large-scale

Off-Policy-2-Stage This repo provides a PyTorch implementation of the MovieLens experiments for the following paper: Off-policy Learning in Two-stage

Attractors A small module that provides functions and classes for very efficient simulation and rendering of iterated function systems; dynamical syst

EP2520_ACME_Project Repository for a project of the course EP2520 Building Networked Systems Security in Royal Institute of Technology (KTH), Stockhol

Convenient script for trading with python.

webapp-wordlists This repository contains wordlists for each versions of common web applications and content management systems (CMS). Each version co

AugLiChem Welcome to AugLiChem! The augmentation library for chemical systems. This package supports augmentation for both crystaline and molecular sy

Across-animal odor decoding by probabilistic manifold alignment (NeurIPS 2021) This repository is the official implementation of aligned mixture of la

Removing Inter-Experimental Variability from Functional Data in Systems Neuroscience This repository is the official implementation of [https://www.bi

Hexlet Logs Demo Пререквизиты docker-compose python3 Учетка в DataDog Базовое понимание, что такое логи (можно почитать гайд

Long Expressive Memory for Sequence Modeling This repository contains the implementation to reproduce the numerical experiments of the paper Long Expr

RecList RecList Free software: MIT license Documentation: https://reclist.readthedocs.io. Overview RecList is an open source library providing behavio

PENecro This project is based on "Enabling dynamic analysis of Legacy Embedded Systems in full emulated environment", published on hardwear.io USA 202

Emotional-Support-Conversation Copyright © 2021 CoAI Group, Tsinghua University. All rights reserved. Data and codes are for academic research use onl

outlook-automated-backup-control Backup monitoring on a mailbox: In this mailbox there will be backup logs. The identification will based on the follo

Problem statements on System Design and Software Architecture as part of Arpit's System Design Masterclass

osqueryIR osqueryIR is an artifact collection tool for Linux systems. It provides the following capabilities: Execute osquery SQL queries Collect file

NVTabular is a feature engineering and preprocessing library for tabular data designed to quickly and easily manipulate terabyte scale datasets used to train deep learning based recommender systems.

RecList is an open source library providing behavioral, "black-box" testing for recommender systems.

PowerGridworld provides users with a lightweight, modular, and customizable framework for creating power-systems-focused, multi-agent Gym environments that readily integrate with existing training frameworks for reinforcement learning (RL).

MultiModal-Collaborative (MMC) Learning Framework for integrating RGB and Thermal spectral modalities This is the official code for NeurIPS 2021 Machi

KML: A Machine Learning Framework for Operating Systems & Storage Systems Storage systems and their OS components are designed to accommodate a wide v

M2MeT challenge baseline -- AliMeeting This project provides the baseline system recipes for the ICASSP 2020 Multi-channel Multi-party Meeting Transcr

Welcome to AirSim AirSim is a simulator for drones, cars and more, built on Unreal Engine (we now also have an experimental Unity release). It is open

Emotion Recognition in Conversations Updates 🔥 🔥 🔥 Date Announcements 03/08/2021 🎆 🎆 We have released a new dataset M2H2: A Multimodal Multiparty

Welcome MICOM is a Python package for metabolic modeling of microbial communities currently developed in the Gibbons Lab at the Institute for Systems

cdist This is the community maintained fork of ungleich's cdist (after f061fb1). Work is split between three repositories: cdist - implementation of t

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

Badtray This is a very simple self-hosted server to receive files from remote systems. This works similar to Bintray (RIP) and primarily designed to d

Using Sampling to Estimate and Improve Performance of Automated Scoring Systems with Guarantees Implementation of the paper titled "Using Sampling to

Improved Adversarial Systems for 3D Object Generation and Reconstruction: This is a repository for the paper "Improved Adversarial Systems for 3D Obje

tree-SNE t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in s

An experimental Python-to-C transpiler and domain specific language for embedded high-performance computing

The Python Control Systems Library is a Python module that implements basic operations for analysis and design of feedback control systems.

Vulkan Light Bakary MSU Graphics Group Student's Diploma Project Treefonov Andrey [GitHub] [LinkedIn] Project Goal The goal of the project is to imple

A distributed, plug-n-play algorithm for multi-robot applications with a priori non-computable objective functions Kapoutsis, A.C., Chatzichristofis,

slim-python is a package to learn customized scoring systems for decision-making problems. These are simple decision aids that let users make yes-no p

Daiho is a Script Developed with Python3. It gathers a total of 22 Discord tools (including a RAT, a Raid Tool, a Nuker Tool, a Token Grabberr, etc). It has a pleasant and intuitive interface to facilitate the use of all with help and explanations for each of them.

ICS-Visualizer is an interactive Industrial Control Systems (ICS) network graph that contains up-to-date ICS metadata (Name, company, port, user manua

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

Learning an Adaptive Meta Model-Generator for Incrementally Updating Recommender Systems This is our experimental code for RecSys 2021 paper "Learning

MultiModal-Collaborative (MMC) Learning Framework for integrating RGB and Thermal spectral modalities This is the official code for NeurIPS 2021 Machi

System Design Assignments The repository contains a set of problem statements around Software Architecture and System Design as conducted by Arpit's S

FreeCAD InvGears workbench Current version 0.1.1 Overview The InvGears workbench allows the creation of gear systems. The gear generation algorithm is

AlphaFold Analyser This program produces high quality visualisations of predicted structures produced by AlphaFold. These visualisations allow the use

Autonomous Ground Vehicle Navigation and Control Simulation Examples in Python THIS PROJECT IS CURRENTLY A WORK IN PROGRESS AND THUS THIS REPOSITORY I

Payu Payu is a climate model workflow management tool for supercomputing environments. Payu is currently only configured for use on computing clusters

What is autoRICEWQ? This project aims to be a handler for input creation and running of multiple RICEWQ simulations. What is RICEWQ? From the descript

Lutris Lutris helps you install and play video games from all eras and from most gaming systems. By leveraging and combining existing emulators, engin

Baselining, on steroids! Baseline is a cross-platform library and command-line utility that creates file-oriented baselines of your systems. The proje

ToeholdTools Category Status Repository Package Build Quality A library for the analysis of toehold switch riboregulators created by the iGEM team Cit

OpenBox Doc | OpenBox中文文档 OpenBox: Generalized and Efficient Blackbox Optimization System OpenBox is an efficient and generalized blackbox optimizatio

Reverse engineering recurrent neural networks with Jacobian switching linear dynamical systems This repository is the official implementation of Rever

Amortized Assimilation This repository contains a PyTorch implementation of the paper Learning to Assimilate in Chaotic Dynamical Systems. Abstract: T

Constructing Neural Network-Based Models for Simulating Dynamical Systems Note this repo is work in progress prior to reviewing This is a companion re

Transfer learning approach to bicycle sharing systems station location planning using OpenStreetMap Companion repository to the paper accepted at the

covert-control Control systems remotely by uploading files to Google Drive, OneDrive, Youtube or Telegram using Python to create the files and the lis

Intelligent Systems Project In Python

Delayed Propagation Transformer: A Universal Computation Engine towards Practical Control in Cyber-Physical Systems Introduction Multi-agent control i

CovidTrack A Solution to ensure Crowd Management with Contactless and Safe systems. ML Model Mask Detection Social Distancing Detection Analytics Page

Table of contents Introduction Dataset Model & Metrics How to Run Quickstart Install Training Evaluation Detection DATA COMPETITION The COVID-19 pande

PYTHON-EXPLOITATION This is a repository filled with scripts that were made with Python, and designed to exploit computer systems. Networking tcp_clin

Roto-translated Local Coordinate Frames for Interacting Dynamical Systems Source code for Roto-translated Local Coordinate Frames for Interacting Dyna

pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image

Package Delivery Rover 🚀 This project is a prototype of Self Driving Car. It's based on embedded systems, to meet the current requirement of delivery

MultiWOZ Context-to-Response Evaluation Standardized and easy to use Inform, Success, BLEU ~ See the paper ~ Easy-to-use scripts for standardized eval

Machine Learning Systems Design Read this booklet here. This booklet covers four main steps of designing a machine learning system: Project setup Data

Group members information Member 1: Lixue Liang Member 2: Yuet Lee Chan Member 3: Xinruo Zhang Member 4: Yifei Han User Manual Generate Attack Packets

AI Assistant for Building Reliable, High-performing and Fair Multilingual NLP Systems

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

AB-TRAP: building invisibility shields to protect network devices The AB-TRAP framework is applicable to the development of Network Intrusion Detectio

(Py)TOD: Tensor-based Outlier Detection, A General GPU-Accelerated Framework Background: Outlier detection (OD) is a key data mining task for identify

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

PyFstab Generator PyFstab Generator is a small Python script to write and generate /etc/fstab files based on yaml file on Unix-like systems. NOTE : Th

Programação de Sistemas Robóticos Miguel Riem Oliveira Universidade de Aveiro 2021-2022 Projeto AtlasCar Projecto RACE IROS 2014 AtlasCar2 ATOM IROS 2

phpipam-dhcp-config-generator This will generate a very basic DHCP config with use of PHPIPAM systems. Requirements PHPIPAM Custom Fields domain_name

Kaggle: Cell Instance Segmentation The goal of this challenge is to detect cells in microscope images. with simple view on how many cels have been ann

chimera-bootstrap This is a simple tool for bootstrapping Chimera systems from binaries. For source builds, you want cports. Simple usage: $ # run as

DeLag: Detecting Latency Degradation Patterns in Service-based Systems Replication package of the work "DeLag: Detecting Latency Degradation Patterns

collie Collie is a library for preparing, training, and evaluating implicit deep learning hybrid recommender systems, named after the Border Collie do

Automatic-precautionary-guard automated systems to assist guarding corona Virus precautions for Closed Rooms (e.g. Halls, offices, etc..) what is this

Distributed Synchronization for Python Tutti is a nearly drop-in replacement for python's built-in synchronization primitives that lets you fearlessly

NVIDIA Merlin NVIDIA Merlin is an open source library designed to accelerate recommender systems on NVIDIA’s GPUs. It enables data scientists, machine

pykoop pykoop is a Koopman operator identification library written in Python. It allows the user to specify Koopman lifting functions and regressors i

AequeVox Replication Package for AequeVox:Automated Fariness Testing for Speech Recognition Systems README under development. Python Packages Required

Accuracy-Diversity Trade-off in Recommender Systems via Graph Convolutions This repository contains the code of the paper "Accuracy-Diversity Trade-of

DANSER-WWW-19 This repository holds the codes for Dual Graph Attention Networks for Deep Latent Representation of Multifaceted Social Effects in Recom

A library of Recommender Systems This repository provides a summary of our research on Recommender Systems. It includes our code base on different rec

Detecting Beneficial Feature Interactions for Recommender Systems (L0-SIGN) This is our implementation for the paper: Su, Y., Zhang, R., Erfani, S., &