Python Biological-data-analysis Resources

Nonnegative spatial factorization for multivariate count data This repository contains supporting code to facilitate reproducible analysis. For detail

Kite Helper - Download Stock Market Data 🌎 Website Simple Application to Download any stock market data in .csv format using Kite 🏃‍♂️ Running Serve

Stitch together Nanopore tiled amplicon data using a reference guided approach Tiled amplicon data, like those produced from primers designed with pri

twitch-leak-bot-discord A bot to display per user data from the Twitch Leak by username Where's the data? I can't and don't want to supply the .csv's

Tooling for converting STAC metadata to ODC data model.

django-admin-data-from-external-service Helpers to extend Django Admin with data from external service with minimal hacks Live demo with sources on He

A lightweight, hub-and-spoke dashboard for cross-account Data Science Projects Introduction Modern Data Science environments often involve many indepe

indomarinefish This package will give us information about the latest total marine fish production in Indonesia. The Name of the fish is written in In

Mix3D: Out-of-Context Data Augmentation for 3D Scenes (3DV 2021) Alexey Nekrasov*, Jonas Schult*, Or Litany, Bastian Leibe, Francis Engelmann Mix3D is

Spotify Playlist Updater A Python script to update Spotify Playlist data every 5 minutes. Description An automatic playlist updater using Spotify API

SubTab: Author: Talip Ucar ([email protected]) The official implementation of the paper, SubTab: Subsetting Features of Tabular Data for Self-Supervis

Social Media Scraper An utility library to scrape data from TikTok, Instagram, Twitch, Youtube, Twitter or Reddit in one line! Go to the website » Vie

This is the official implementation of our neural-network-based fast diffuse room impulse response generator (FAST-RIR) for generating room impulse responses (RIRs) for a given acoustic environment.

Documentation Pyraug This library provides a way to perform Data Augmentation using Variational Autoencoders in a reliable way even in challenging con

Visualize ICLR 2022 OpenReview Data

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

MLOps template with examples for Data pipelines, ML workflow management, API development and Monitoring.

A generic text conversion/processing tool

Script that organizes the Google Takeout archive into one big chronological folder

LeasePlan - Scraper This app will let you continuously scrape certain parts of LeasePlan and extract data of cars becoming available for lease. It has

PyTorch implementation of DUL (Data Uncertainty Learning in Face Recognition, CVPR2020)

DATAWAREHOUSE ON AWS The purpose of this project is to build a datawarehouse to accomodate data of active user activity for music streaming applicatio

⭐ SurvTRACE: Transformers for Survival Analysis with Competing Events This repo provides the implementation of SurvTRACE for survival analysis. It is

Persian Kaldi Profile A Rhasspy profile for Persian (fa). Installation Get started by first installing Vosk: # Create virtual environment python3 -m v

WhiteBox Utilities Toolkit: Tools to make your life easier Fancy data functions that will make your life as a data scientist easier. Installing To ins

Exploratory Data Analysis for Employee Retention Dataset Employee turn-over is a very costly problem for companies. The cost of replacing an employee

NanoImgPro Nanosensor Image Processor (NanoImgPro), a python-based image analysis tool for dopamine nanosensors NanoImgPro.py contains the main class

Graphsignal is a machine learning model monitoring platform. It helps ML engineers, MLOps teams and data scientists to quickly address issues with data and models as well as proactively analyze model performance and availability.

Data Efficient Decision Making

Python Repositori ini berisi kumpulan dari berbagai macam contoh struktur data, algoritma dan komputasi matematika yang diimplementasikan dengan mengg

Project Azua 0. Overview Many modern AI algorithms are known to be data-hungry, whereas human decision-making is much more efficient. The human can re

Python Client and Toolkit for DataFrames, Big Data, Machine Learning and ETL in Elasticsearch

Angora Angora is a mutation-based coverage guided fuzzer. The main goal of Angora is to increase branch coverage by solving path constraints without s

HyDiff: Hybrid Differential Software Analysis This repository provides the tool and the evaluation subjects for the paper HyDiff: Hybrid Differential

PyVideo Speakers A CLI that visualises repeat speakers from events listed in https://github.com/pyvideo/data Not terribly efficient, but you know. Ins

Tablexplore is an application for data analysis and plotting built in Python using the PySide2/Qt toolkit.

wyscoutapi wyscoutapi is an extremely basic API client for the Wyscout API (v2 & v3). Usage Install with pip install wyscoutapi. To connect to the Wys

Telco Customer Churn Prediction - Plotly Dash Application Description This dash application allows you to predict telco customer churn using machine l

Tickergram is a Telegram bot to look up quotes, charts, general market sentiment and more.

Write maintainable, production-ready pipelines using Jupyter or your favorite text editor. Develop locally, deploy to the cloud. ☁️

ThousandEyes Grafana Dashboard Extract data from the ThousandEyes REST API and visualize it on your customized Grafana Dashboard. Deploy Grafana, Infl

Analyse a forensic target (such as a directory) to find and report files found and not found from CIRCL hashlookup public service. This tool can help a digital forensic investigator to know the context, origin of specific files during a digital forensic investigation.

Why efficient Python? Because using Python more efficiently will make your code more readable and run more efficiently.

Genomic ULMFiT This is an implementation of ULMFiT for genomics classification using Pytorch and Fastai. The model architecture used is based on the A

DSA-Code-Snippet This repository is for adding codes of data structures and algorithms, leetCode, hackerrank etc solutions in different languages Cont

dbt-osmosis First and foremost, we want dbt documentation to retain a DRY principle. Every time we repeat ourselves, we waste our time. Second, we wan

Python DSA 🐍 This repository is a compilation of important Data Structures and Algorithms based on Python. Please make seperate folders for different

Vectorizers for a range of different data types

α-Indirect Control in Onion-like Networks

deep-table implements various state-of-the-art deep learning and self-supervised learning algorithms for tabular data using PyTorch.

pcnaDeep: a deep-learning based single-cell cycle profiler with PCNA signal Welcome! pcnaDeep integrates cutting-edge detection techniques with tracki

Social Media Focal Events The focalevents codebase provides tools for organizing data collected around focal events on social media. It is often diffi

Transformers4Rec is a flexible and efficient library for sequential and session-based recommendation, available for both PyTorch and Tensorflow.

Data lineage made simple, reliable, and automated. Effortlessly track the flow of data, understand dependencies and analyze impact. Features Visualiza

EPCDepth EPCDepth is a self-supervised monocular depth estimation model, whose supervision is coming from the other image in a stereo pair. Details ar

A curated (most recent) list of resources for Learning with Noisy Labels

ThePhish ThePhish is an automated phishing email analysis tool based on TheHive, Cortex and MISP. It is a web application written in Python 3 and base

Ancient Greek BERT The first and only available Ancient Greek sub-word BERT model! State-of-the-art post fine-tuning on Part-of-Speech Tagging and Mor

PyNeuro PyNeuro is designed to connect NeuroSky's MindWave EEG device to Python and provide Callback functionality to provide data to your application

This YoloV5 based model is fit to detect people and different types of land vehicles, and displaying their density on a fitted map, according to their

Manifold-SCA Research Artifact of USENIX Security 2022 Paper: Automated Side Channel Analysis of Media Software with Manifold Learning The repo is org

A PyTorch repo for data loading and utilities to be shared by the PyTorch domain libraries.

AutoTabular automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just a few lines of code, you can train and deploy high-accuracy machine learning and deep learning models tabular data.

face.evoLVe: High-Performance Face Recognition Library based on PaddlePaddle & PyTorch Evolve to be more comprehensive, effective and efficient for fa

Imbalanced Dataset Sampler Introduction In many machine learning applications, we often come across datasets where some types of data may be seen more

D2L.ai: Interactive Deep Learning Book with Multi-Framework Code, Math, and Discussions Book website | STAT 157 Course at UC Berkeley | Latest version

Hierarchical neural-net interpretations (ACD) 🧠 Produces hierarchical interpretations for a single prediction made by a pytorch neural network. Offic

Correlation Explanation Methods Official implementation of linear correlation explanation (linear CorEx) and temporal correlation explanation (T-CorEx

IGMTF The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting". Requirements The framework

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

🔧 What is it? Wrench is a benchmark platform containing diverse weak supervision tasks. It also provides a common and easy framework for development

Code and data to accompany the camera-ready version of "Cross-Attention is All You Need: Adapting Pretrained Transformers for Machine Translation" in EMNLP 2021

Pro Football Reference Game Data Webscraper Code Copyright Yeetzsche This is a simple Pro Football Reference Webscraper that can either collect all ga

📊📈 Serves up Pandas dataframes via the Django REST Framework for use in client-side (i.e. d3.js) visualizations and offline analysis (e.g. Excel)

py-spy: Sampling profiler for Python programs py-spy is a sampling profiler for Python programs. It lets you visualize what your Python program is spe

Domino Research This repo contains projects under active development by the Domino R&D team. We build tools that help Data Scientists and ML engineers

BERT Got a Date: Introducing Transformers to Temporal Tagging Satya Almasian*, Dennis Aumiller*, and Michael Gertz Heidelberg University Contact us vi

pyspark-anonymizer Python library which makes it possible to dynamically mask/anonymize data using JSON string or python dict rules in a PySpark envir

My solution for the Meli Data Challenge 2021

The PASS dataset: pretrained models and how to get the data - PASS: Pictures without humAns for Self-Supervised Pretraining

Transformers4Rec is a flexible and efficient library for sequential and session-based recommendation, available for both PyTorch and Tensorflow.

Awesome angr A collection of resources/tools and analyses for the angr binary analysis framework. This page does not only collect links and external r

NaNsAreNumbers An esoteric data type built entirely of NaNs. Installation pip install nans_are_numbers Explanation A floating point number is just co

With DataQA, you can label unstructured text documents using rule-based distant supervision.

Pytorch Squeeznet Pytorch implementation of Squeezenet model as described in https://arxiv.org/abs/1602.07360 on cifar-10 Data. The definition of Sque

Pytorch Recurrent Variational Autoencoder Model: This is the implementation of Samuel Bowman's Generating Sentences from a Continuous Space with Kim's

Anchored CorEx: Hierarchical Topic Modeling with Minimal Domain Knowledge Correlation Explanation (CorEx) is a topic model that yields rich topics tha

TextAttack 🐙 Generating adversarial examples for NLP models [TextAttack Documentation on ReadTheDocs] About • Setup • Usage • Design About TextAttack

Faker is a Python package that generates fake data for you. Whether you need to bootstrap your database, create good-looking XML documents, fill-in yo

Model Agnostic Confidence Estimator (MACEST) - A Python library for calibrating Machine Learning models' confidence scores

This cheat sheet will help you learn PySpark and write PySpark apps faster. Everything in here is fully functional PySpark code you can run or adapt to your programs.

TorchGeo is a PyTorch domain library, similar to torchvision, that provides datasets, transforms, samplers, and pre-trained models specific to geospatial data.

The project is investigating methods to extract human-marked data from document forms such as surveys and tests. They can read questions, multiple-choice exam papers, and grade.

Linked Data are becoming more popular for user-created metadata in HDF5 files.

AAGCN-ACSA EMNLP 2021 Introduction This repository was used in our paper: Beta Distribution Guided Aspect-aware Graph for Aspect Category Sentiment An

Pyan takes one or more Python source files, performs a (rather superficial) static analysis, and constructs a directed graph of the objects in the combined source, and how they define or use each other. The graph can be output for rendering by GraphViz or yEd.

py-spy: Sampling profiler for Python programs py-spy is a sampling profiler for Python programs. It lets you visualize what your Python program is spe

django-web-profiler's documentation: Introduction: django-web-profiler is a django profiling tool which logs, stores debug toolbar statistics and also

Django REST Pandas Django REST Framework + pandas = A Model-driven Visualization API Django REST Pandas (DRP) provides a simple way to generate and se

Welcome to hltv-data 👋 🎮 Data from popular CS:GO website hltv.org Install pip install hltv-data Usage The public methods can be reached using HLTVCl