Python Biological-data-analysis Resources

Enhancing Knowledge Tracing via Adversarial Training This repository contains source code for the paper "Enhancing Knowledge Tracing via Adversarial T

Aquarius Aquarius - Enabling Fast, Scalable, Data-Driven Virtual Network Functions NOTE: We are currently going through the open-source process requir

deeptime Releases: Installation via conda recommended. conda install -c conda-forge deeptime pip install deeptime Documentation: deeptime-ml.github.io

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

PerfPlotter Read data from CSV files using pandas and generate interactive plots using bokeh, which can then be embedded into HTML pages and served by

Table of contents Introduction Dataset Model & Metrics How to Run Quickstart Install Training Evaluation Detection DATA COMPETITION The COVID-19 pande

Scraping Data Get public data and save in database This is project use Python How to run a project 1 - Clone the repository 2 - Install beautifulsoup4

ELFXtract ELFXtract is an automated analysis tool used for enumerating ELF binaries Powered by Radare2 and r2ghidra This is specially developed for PW

py-image-dedup is a tool to sort out or remove duplicates within a photo library. Unlike most other solutions, py-image-dedup intentionally uses an approximate image comparison to also detect duplicates of images that slightly differ in resolution, color or other minor details.

NYU-VPR This repository provides the experiment code for the paper Long-Term Visual Place Recognition Benchmark with View Direction and Data Anonymiza

Seaflowpy A Python package for SeaFlow flow cytometer data. Table of Contents Install Read EVT/OPP/VCT Files Command-line Interface Configuration Inte

Python Snippet Tool A tool to get Python and data science snippets at Data Science Simplified on the command line. You can read my article to learn ho

MsfMania MsfMania is a command line tool developed in Python that is designed to bypass antivirus software on Windows and Linux/Mac in the future. Sum

Plag Description A CLI Application to detect plagiarism in Source Code Files. Features Compare source code files for plagiarism. Extract code features

Splitgraph Overview Splitgraph is a tool for building, versioning and querying reproducible datasets. It's inspired by Docker and Git, so it feels fam

TAug :: Time Series Data Augmentation using Deep Generative Models Note!!! The package is under development so be careful for using in production! Fea

Jupyter Pylinter A simple tool to extract python code from a Jupyter notebook, and then run pylint on it for static analysis. If you find this tool us

Deep Illuminator Deep Illuminator is a data augmentation tool designed for image relighting. It can be used to easily and efficiently generate a wide

SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data Au

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

USSBriefs2021 This provides the R code and data to replicate results in "The USS Trustee’s risky strategy" by Neil M Davies, Jackie Grant and Chin Yan

MosaicKD Code for NeurIPS-21 paper "Mosaicking to Distill: Knowledge Distillation from Out-of-Domain Data" 1. Motivation Natural images share common l

Code Scripts and Processing Files for EEG Sleep Staging Paper 1. Folder Tree ./src_preprocess (data preprocessing files for SHHS and Sleep EDF) sleepE

BalancingGroups Code to replicate the experimental results from Simple data balancing baselines achieve competitive worst-group-accuracy. Replicating

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

NCAE_UAD Official project repository of 'Normality-Calibrated Autoencoder for Unsupervised Anomaly Detection on Data Contamination' Abstract In this p

ColossalAI An integrated large-scale model training system with efficient parallelization techniques. arXiv: Colossal-AI: A Unified Deep Learning Syst

Datenvisualisierung-Elektromagnetischen-Spektrum Anhand des Moduls matplotlib sollen die Daten des elektromagnetischen Spektrums dargestellt werden. D

Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no

pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image

LightLog Introduction LightLog is an open source deep learning based lightweight log analysis tool for log anomaly detection. Function description [BG

CRISPR-detector Here we propose our CRISPR-detector to facilitate the CRISPR-edited amplicon and whole genome sequencing data analysis, with functions

Brawl Stars Proxy Experimental proxy for version 39.99 of Brawl Stars. It allows you to capture the packets being sent between the Brawl Stars client

DWIPrep: A Robust Preprocessing Pipeline for dMRI Data DWIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transp

Synthetic-Data-Replica-for-Healthcare Description What is this? A tailored hands-on tutorial showing how to use Python to create synthetic data replic

MosaicKD Code for NeurIPS-21 paper "Mosaicking to Distill: Knowledge Distillation from Out-of-Domain Data" 1. Motivation Natural images share common l

🤖 rover Rover is a command line interface application that allows through browse through mission data, images, metadata from the NASA Official Websit

PubTables-1M This repository contains training and evaluation code for the paper "PubTables-1M: Towards a universal dataset and metrics for training a

Implementation of Apriori Algorithm for Association Analysis

Spatial Interpolation Toolbox This is the home to Spatial Interpolation Toolbox, a graphical user interface (GUI) for interpolating geographic vector

Make Better Defaults Author: Kjell Wooding [email protected] This is the git repo for Makefiles: One great trick for making your conda environments mo

🧠 kendrite A framework for attentive explainable deep learning on tabular data 💨 Quick start kedro run 🧱 Built upon Technology Description Links ke

Towhee is a flexible machine learning framework currently focused on computing deep learning embeddings over unstructured data.

Cut-Thumbnail (Accepted at ACM MULTIMEDIA 2021) Tianshu Xie, Xuan Cheng, Xiaomin Wang, Minghui Liu, Jiali Deng, Tao Zhou, Ming Liu This is the officia

Bundles This repository is just an example of how we can host Git bundles in a way that supports fetching data from precomputed bundles without the or

Bendford analysis of Ethereum transaction The python script script.py extract from already downloaded archive file the ethereum transaction. The value

ColossalAI An integrated large-scale model training system with efficient parallelization techniques Installation PyPI pip install colossalai Install

python-is-cool A gentle guide to the Python features that I didn't know existed or was too afraid to use. This will be updated as I learn more and bec

SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data SurvITE: Learning Heterogeneous Treatment Effects from Time-to-Event Data Au

BalancingGroups Code to replicate the experimental results from Simple data balancing baselines achieve competitive worst-group-accuracy. Replicating

kNN-vs-RFR My project contrasts K-Nearest Neighbors and Random Forrest Regressors on Real World data In many areas, rental bikes have been launched to

ycomp ycomp is a tool for working with Y-chromosome data from YFull and FTDNA. Run ycomp -h for information on how to use the program. Installation Th

K Means Algorithm What is K Means This algorithm is an iterative algorithm that partitions the dataset according to their features into K number of pr

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

Multi-band Spectro Radiomertric Image Analysis with K-means Cluster Algorithm Overview Multi-band Spectro Radiomertric images are images comprising of

PyTorch framework A simple and complete framework for PyTorch, providing a variety of data loading and simple task solutions that are easy to extend and migrate

We proposed a new approach to detect anomalies of mobile robot data. We investigate each data seperately with two clustering method hierarchical and k-means. There are two sub-method that we used for produce an anomaly score. Then, we merge these two score and produce merged anomaly score as a result.

EarthGAN - Earth Mantle Surrogate Modeling Can a surrogate model of the Earth’s Mantle Convection data set be built such that it can be readily run in

ShICA Code accompanying the paper Shared Independent Component Analysis for Multi-subject Neuroimaging Install Move into the ShICA directory cd ShICA

Unified Instance and Knowledge Alignment Pretraining for Aspect-based Sentiment Analysis Requirements python 3.7 pytorch-gpu 1.7 numpy 1.19.4 pytorch_

single_snake_sequencing - sc/snRNAseq Snakemake Workflow A Snakemake workflow for standardised sc/snRNAseq analysis. Every single cell analysis is sli

Data Structure and Algorithm : Want to learn data strutrues and algorithms ??? Then Stop thinking more and start to learn today. This repo will help y

Data visualization using matplotlib project instructions Top 5 Most Common Coffee Origins In this visualization I used data from Ankur Chavda on Kaggl

Qimera: Data-free Quantization with Synthetic Boundary Supporting Samples This repository is the official implementation of paper [Qimera: Data-free Q

Leyna's Visualizing Data Below is information on the number of bilingual students in three school districts in Massachusetts. You will also find infor

HW_02 Data visualisation and Matplotlib practice Instructions for HW_02 Idea for data analysis As I was brainstorming ideas and running through databa

light-weight-depth-estimation Boosting Light-Weight Depth Estimation Via Knowledge Distillation, https://arxiv.org/abs/2105.06143 Junjie Hu, Chenyou F

Rick and Morty Data Visualization For this project I looked at data for the TV show Rick and Morty Number of Episodes at a Certain Location Here is th

Keir's Visualizing Data on Life Expectancy Below is information on life expectancy in the United States from 1900-2017. You will also find information

Data Visualisations This is a small repository for me to implement my simply Data Visualisation skills through Python. Steam Population Chart from 10/

Auto-Research A no-code utility to generate a detailed well-cited survey with topic clustered sections (draft paper format) and other interesting arti

Data Visualizations These data visualizations were created as homework for my CS40 class. I hope you enjoy! Nobel Laureates by their Country of Birth

geospatial-data-analysis [readme] Use this code in your Python IDE or notebook to generate a basic Kepler.gl data visualization, without pre-configura

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

handwritten-digits-recognition A script that trains a model to recognize handwritten digits using the MNIST data set. Then it loads external files and

trimodal_person_verification This repository contains the code, and preprocessed dataset featured in "A Study of Multimodal Person Verification Using

signed-area-causal-inference This repository contains code demonstrating the methods outlined in Path Signature Area-Based Causal Discovery in Coupled

es-imagenet-master code for generating data set ES-ImageNet with corresponding training code dataset generator some codes of ODG algorithm The variabl

CoProtector Code for the prototype tool in our paper "CoProtector: Protect Open-Source Code against Unauthorized Training Usage with Data Poisoning".

DECAF (DEbiasing CAusal Fairness) Code Author: Trent Kyono This repository contains the code used for the "DECAF: Generating Fair Synthetic Data Using

CoProtector Code for the prototype tool in our paper "CoProtector: Protect Open-Source Code against Unauthorized Training Usage with Data Poisoning".

How Tight Can PAC-Bayes be in the Small Data Regime? This is the code to reproduce all experiments for the following paper: @inproceedings{Foong:2021:

CodingSimplified_GK This repository is aimed at creating a One stop Destination of codes of all Data structures and Algorithms along with basic explai

Spectacular AI SDK examples Spectacular AI SDK fuses data from cameras and IMU sensors (accelerometer and gyroscope) and outputs an accurate 6-degree-

Anti-Backdoor Learning PyTorch Code for NeurIPS 2021 paper Anti-Backdoor Learning: Training Clean Models on Poisoned Data. Check the unlearning effect

PyABSA - Open & Efficient for Framework for Aspect-based Sentiment Analysis

Table of Contents What is GeoNode? Try out GeoNode Install Learn GeoNode Development Contributing Roadmap Showcase Most useful links Licensing What is

Awesome Spectral Indices in Python: Numpy | Pandas | GeoPandas | Xarray | Earth Engine | Planetary Computer | Dask GitHub: https://github.com/davemlz/

Flask REST API Python 3.9.7 The Flask experience, without data persistence :D First, to install all dependencies: python -m pip install -r requirement

Visualizing Technical Indicators Using Python and Plotly. Currently facing issues hosting the application on heroku. As soon as I am able to I'll like

excel-to-html Problem Statement! - Fetch data from excel file and create html file Excel.xlsx file contain the information.in multiple rows that is ne

fisher_py This Python module allows access to Thermo Orbitrap raw mass spectrometer files. Using this library makes it possible to automate the analys

Surf's Up Weather analysis with Python, SQLite, SQLAlchemy, and Flask Overview The purpose of this analysis was to examine weather trends (precipitati

Machine Learning Sleep Schedule Tracker What is it? Convolutional neural network web app trained to track our infant’s sleep schedule using our Google

Web Trader Web Trader is a trading website that consolidates data from Nasdaq, allowing the user to search up the ticker symbol and price of any stock

datascienv is package that helps your to setup your environment in single line of code with all dependency and it is also include pyforest that provide single line of import all required ml libraries

Water Quality FVM (Budapest, HU) custom integration for Home Assistant This custom component integrates water quality information provided by Budapest

Adaptive wavelets Wavelets which adapt given data (and optionally a pre-trained model). This yields models which are faster, more compressible, and mo

Congress-Analysis Bar Chart of the number of Senators from each party who are up for election in the next three General Elections This bar chart shows

Solution Solución propuesta para el reto BBVA Contigo del Hackathon BBVA 2021. Equipo Mexdapy. Integrantes: David Pedroza Segoviano Regina Priscila Ba