Python Computational-science Resources

zEpid zEpid is an epidemiology analysis package, providing easy to use tools for epidemiologists coding in Python 3.5+. The purpose of this library is

Skoot is a lightweight python library of machine learning transformer classes that interact with scikit-learn and pandas. Its objective is to ex

dirty_cat dirty_cat is a Python module for machine-learning on dirty categorical variables.

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

Please consider citing the manuscript if you use apricot in your academic work! You can find more thorough documentation here. apricot implements subm

Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization

An optimization and data collection toolbox for convenient and fast prototyping of computationally expensive models. Hyperactive: is very easy to lear

giotto-tda is a high-performance topological machine learning toolbox in Python built on top of scikit-learn and is distributed under the G

Scanpy – Single-Cell Analysis in Python Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It inc

Welcome to Streamlit 👋 The fastest way to build and share data apps. Streamlit lets you turn data scripts into sharable web apps in minutes, not week

Awesome Streamlit The fastest way to build Awesome Tools and Apps! Powered by Python! The purpose of this project is to share knowledge on how Awesome

An open-source, low-code machine learning library in Python 🚀 Version 2.3.5 out now! Check out the release notes here. Official • Docs • Install • Tu

Nuance I use Nuance to curate varied visualization thoughts during my data scientist career. It is not yet a package but a list of small ideas. Welcom

dsnk-distributions package dsnk distribution is a Python module for data science and machine learning that was created with the goal of reducing calcu

Factorisation-based Image Labelling Overview This is a scheme for training and applying the factorisation-based image labelling (FIL) framework. Some

Deep Learning with PyTorch made easy 🚀 ! Carefree? carefree-learn aims to provide CAREFREE usages for both users and developers. It also provides a c

BookNLP BookNLP is a natural language processing pipeline that scales to books and other long documents (in English), including: Part-of-speech taggin

How to use TensorLayer While research in Deep Learning continues to improve the world, we use a bunch of tricks to implement algorithms with TensorLay

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

Projeto: Machine Learning: Linguagens de Programacao 2004-2001 Projeto de Data Science e Machine Learning de análise de linguagens de programação de 2

Predicting Yelp Review Quality Table of Contents Introduction Motivation Goal and Central Questions The Data Data Storage and ETL EDA Data Pipeline Da

MIT Deep Learning This repository is a collection of tutorials for MIT Deep Learning courses. More added as courses progress. Tutorial: Deep Learning

Python Business Analytics Also instead of "watching" you can join the link-letter, it's already being sent out to about 90 people and you are free to

Python Data Science Handbook This repository contains the entire Python Data Science Handbook, in the form of (free!) Jupyter notebooks. How to Use th

Simple but powerful Automated Machine Learning library for tabular data. It uses efficient in-memory SAP HANA algorithms to automate routine Data Scie

Continuous Machine Learning project integration with DVC Data Version Control or DVC is an open-source tool for data science and machine learning proj

IntroNeuralNetworks in Python: A Template Project IntroNeuralNetworks is a project that introduces neural networks and illustrates an example of how o

Twitter COVID-19 Sentiment Analysis Members: Christopher Bach | Khalid Hamid Fallous | Jay Hirpara | Jing Tang | Graham Thomas | David Wetherhold Pro

EmeraldML A machine learning library for streamlining the process of (1) cleaning and splitting data, (2) training, optimizing, and testing various mo

A benchmark of data-centric tasks from across the machine learning lifecycle.

Application-Oriented Performance Benchmarks for Quantum Computing This repository contains a collection of prototypical application- or algorithm-cent

Exposure: A White-Box Photo Post-Processing Framework ACM Transactions on Graphics (presented at SIGGRAPH 2018) Yuanming Hu1,2, Hao He1,2, Chenxi Xu1,

MAPIE - Model Agnostic Prediction Interval Estimator MAPIE allows you to easily estimate prediction intervals (or prediction sets) using your favourit

pyclustering is a Python, C++ data mining library (clustering algorithm, oscillatory networks, neural networks). The library provides Python and C++ implementations (C++ pyclustering library) of each algorithm or model. C++ pyclustering library is a part of pyclustering and supported for Linux, Windows and MacOS operating systems.

NoCodeSeg: Deep segmentation made easy! This is the official repository for the manuscript "Code-free development and deployment of deep segmentation

Everything Tech Resources & Projects About The Project Coming from an engineering background and looking to up skill yourself on a new field can be di

ObsPy is an open-source project dedicated to provide a Python framework for processing seismological data. It provides parsers for common file formats

TSCV: Time Series Cross-Validation This repository is a scikit-learn extension for time series cross-validation. It introduces gaps between the traini

Package: dsm Python package dsm provides an API to train the Deep Survival Machines and associated models for problems in survival analysis. The under

Telemanom (v2.0) v2.0 updates: Vectorized operations via numpy Object-oriented restructure, improved organization Merge branches into single branch fo

DoWhy | An end-to-end library for causal inference Amit Sharma, Emre Kiciman Introducing DoWhy and the 4 steps of causal inference | Microsoft Researc

StackNet This repository contains StackNet Meta modelling methodology (and software) which is part of my work as a PhD Student in the computer science

Examples of techniques for training interpretable ML models, explaining ML models, and debugging ML models for accuracy, discrimination, and security.

LOFO (Leave One Feature Out) Importance calculates the importances of a set of features based on a metric of choice, for a model of choice, by iteratively removing each feature from the set, and evaluating the performance of the model, with a validation scheme of choice, based on the chosen metric.

moDel Agnostic Language for Exploration and eXplanation Overview Unverified black box model is the path to the failure. Opaqueness leads to distrust.

NNI Doc | 简体中文 NNI (Neural Network Intelligence) is a lightweight but powerful toolkit to help users automate Feature Engineering, Neural Architecture

River is a Python library for online machine learning. It is the result of a merger between creme and scikit-multiflow. River's ambition is to be the go-to library for doing machine learning on streaming data.

sklearn-porter Transpile trained scikit-learn estimators to C, Java, JavaScript and others. It's recommended for limited embedded systems and critical

ModelChimp What is ModelChimp? ModelChimp is an experiment tracker for Deep Learning and Machine Learning experiments. ModelChimp provides the followi

Dagster An orchestration platform for the development, production, and observation of data assets. Dagster lets you define jobs in terms of the data f

Metaflow Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects. Metaflow

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

Data Science Cheatsheets List of Data Science Cheatsheets to rule the world. Table of Contents Business Science Business Science Problem Framework Dat

Stuck TX Demo Docker container that runs 4 dogecoind to demonstrate "the stuck tx problem". Scenario A wallet sends out 3 transactions to a recipient

Doom o’clock is a website/project that features a countdown of “when will the earth end” and a greenhouse gas effect emission prediction that’s predicted

Bodywork deploys machine learning projects developed in Python, to Kubernetes. It helps you to: serve models as microservices execute batch jobs run r

MetPy MetPy is a collection of tools in Python for reading, visualizing and performing calculations with weather data. MetPy follows semantic versioni

nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order

Rotapy Purpose Generate Gaussian 09 input files for the rotamers of an input compound. Distance to the axis of rotation remains constant throughout th

scheil A Scheil-Gulliver simulation tool using pycalphad. import matplotlib.pyplot as plt from pycalphad import Database, variables as v from scheil i

ESPEI ESPEI, or Extensible Self-optimizing Phase Equilibria Infrastructure, is a tool for thermodynamic database development within the CALPHAD method

freud Overview The freud Python library provides a simple, flexible, powerful set of tools for analyzing trajectories obtained from molecular dynamics

POS-Tagger This repository details the creation of a Part-of-Speech tagger using Trigram Hidden Markov Models to predict word tags in a word sequence.

This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.

A curated list of the latest breakthroughs in AI by release date with a clear video explanation, link to a more in-depth article, and code

Documentation redrawing Python package provinding tools for artistic interactive applications using AI Created by ReDrawing Campinas team for the Open

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

ZenML is an extensible, open-source MLOps framework to create production-ready machine learning pipelines. It has a simple, flexible syntax, is cloud and tool agnostic, and has interfaces/abstractions that are catered towards ML workflows.

README: GromacsWrapper A primitive Python wrapper around the Gromacs tools. The library is tested with GROMACS 4.6.5, 2018.x, 2019.x, 2020.x, and 2021

waltlabtools A collection of tools for biomedical research assay analysis in Python. Key Features Analysis for assays such as digital ELISA, including

duality Data science, Data manipulation and Machine learning package. Use permitted according to the terms of use and conditions set by the attached l

FIW Data Development Kit Table of Contents Introduction Families In the Wild Database Publications Organization To Do License Getting Involved Introdu

Planning Algorithms in AI and Robotics course T2 2021-22 The Planning Algorithms in AI and Robotics course at Skoltech, MS in Data Science, during T2,

Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm

Book on Julia for Data Science

A large-scale database for graph representation learning

Python Snippet Tool A tool to get Python and data science snippets at Data Science Simplified on the command line. You can read my article to learn ho

Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no

Make Better Defaults Author: Kjell Wooding [email protected] This is the git repo for Makefiles: One great trick for making your conda environments mo

python-is-cool A gentle guide to the Python features that I didn't know existed or was too afraid to use. This will be updated as I learn more and bec

single_snake_sequencing - sc/snRNAseq Snakemake Workflow A Snakemake workflow for standardised sc/snRNAseq analysis. Every single cell analysis is sli

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

Machine Learning Sleep Schedule Tracker What is it? Convolutional neural network web app trained to track our infant’s sleep schedule using our Google

DQC: Differentiable Quantum Chemistry Differentiable quantum chemistry package. Currently only support differentiable density functional theory (DFT)

datascienv is package that helps your to setup your environment in single line of code with all dependency and it is also include pyforest that provide single line of import all required ml libraries

A multi-page streamlit app for the geospatial community.

solar-system-pygame Controls UP/DOWN for Emulation Speed Control ESC for Pause/Unpause q to Quit c or ESC again to Continue LEFT CLICK to Add an orbit

feature-set-comp Compares various time-series feature sets on computational performance, within-set structure, and between-set relationships. Reposito

PyGMT A Python interface for the Generic Mapping Tools Documentation (development version) | Contact | Try Online Why PyGMT? A beautiful map is worth

This book was written for you: an aspiring data scientist with a quantitative background, facing down the gauntlet of the interview process in an increasingly competitive field. For most of you, the interview process is the most significant hurdle between you and a dream job.

Colour - HDRI A Python package implementing various HDRI / Radiance image processing algorithms. It is open source and freely available under the New

Colour - Demosaicing A Python package implementing various CFA (Colour Filter Array) demosaicing algorithms and related utilities. It is open source a

Uncertainty Baselines The goal of Uncertainty Baselines is to provide a template for researchers to build on. The baselines can be a starting point fo

Automatic_Background_Remover A Web API for automatic background removal using Deep Learning. App is made using Flask and deployed on Heroku. 👉 https:

Can You Solve a Problem? A beginner friendly repository that requires you to solve familiar problems with python. This could be as simple as implement

DMBGN: Deep Multi-Behaviors Graph Networks for Voucher Redemption Rate Prediction The implementation of the accepted paper "Deep Multi-Behaviors Graph

Cutout tools for astronomical images Astrocut provides tools for making cutouts from sets of astronomical images with shared footprints. It is under a

Lale is a Python library for semi-automated data science. Lale makes it easy to automatically select algorithms and tune hyperparameters of pipelines that are compatible with scikit-learn, in a type-safe fashion.

Glue Glue is a python project to link visualizations of scientific datasets across many files. Click on the image for a quick demo: Features Interacti

Transform-Invariant Non-Negative Matrix Factorization A comprehensive Python package for Non-Negative Matrix Factorization (NMF) with a focus on learn