Python Graph-clustering Resources

SoGCN: Second-Order Graph Convolutional Networks This is the authors' implementation of paper "SoGCN: Second-Order Graph Convolutional Networks" in Py

Research 发布基于飞桨的前沿研究工作，包括CV、NLP、KG、STDM等领域的顶会论文和比赛冠军模型。 目录 计算机视觉(Computer Vision) 自然语言处理(Natrual Language Processing) 知识图谱(Knowledge Graph) 时空数据挖掘(Spa

GCond A PyTorch implementation of paper "Graph Condensation for Graph Neural Networks" Code will be released soon. Stay tuned :) Abstract We propose a

IGNN Code repo for "Cross-Scale Internal Graph Neural Network for Image Super-Resolution" [paper] [supp] Prepare datasets 1 Download training dataset

Overview The Open Graph Benchmark (OGB) is a collection of benchmark datasets, data loaders, and evaluators for graph machine learning. Datasets cover

Graph Convolutional Networks This is a TensorFlow implementation of Graph Convolutional Networks for the task of (semi-supervised) classification of n

Simplifying Graph Convolutional Networks Updates As pointed out by #23, there was a subtle bug in our preprocessing code for the reddit dataset. After

SPAGAN in PyTorch This is a PyTorch implementation of the paper "SPAGAN: Shortest Path Graph Attention Network" Prerequisites We prefer to create a ne

Intro This repository contains code to generate data and reproduce experiments from our NeurIPS 2019 paper: Boris Knyazev, Graham W. Taylor, Mohamed R

Graph Convolutional Networks for Temporal Action Localization This repo holds the codes and models for the PGCN framework presented on ICCV 2019 Graph

IsoGCN The official implementation of IsoGCN, presented in the ICLR2021 paper Isometric Transformation Invariant and Equivariant Graph Convolutional N

Simple and Deep Graph Convolutional Networks This repository contains a PyTorch implementation of "Simple and Deep Graph Convolutional Networks".(http

Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks This repository contains a TensorFlow implementation of "

When Does Self-Supervision Help Graph Convolutional Networks? PyTorch implementation for When Does Self-Supervision Help Graph Convolutional Networks?

DropEdge: Towards Deep Graph Convolutional Networks on Node Classification This is a Pytorch implementation of paper: DropEdge: Towards Deep Graph Con

Benchmarking Graph Neural Networks Updates Nov 2, 2020 Project based on DGL 0.4.2. See the relevant dependencies defined in the environment yml files

GAT Graph Attention Networks (Veličković et al., ICLR 2018): https://arxiv.org/abs/1710.10903 GAT layer t-SNE + Attention coefficients on Cora Overvie

Residual Gated Graph ConvNets April 24, 2018 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbress

DeepGCNs: Can GCNs Go as Deep as CNNs? In this work, we present new ways to successfully train very deep GCNs. We borrow concepts from CNNs, mainly re

A new codebase for popular Scene Graph Generation methods (2020). Visualization & Scene Graph Extraction on custom images/datasets are provided. It's also a PyTorch implementation of paper “Unbiased Scene Graph Generation from Biased Training CVPR 2020”

Markov Chain Composer Using Markov Chain to represent relationships between words in song lyrics and then generating new lyrics.. ahem interpretive po

GraPE GraPE (Graph Processing and Embedding) is a fast graph processing and embedding library, designed to scale with big graphs and to run on both of

Variational Graph Auto-encoder in Pytorch This repository implements variational graph auto-encoder by Thomas Kipf. For details of the model, refer to

This is a repository for the paper of "Well-classified Examples are Underestimated in Classification with Deep Neural Networks" The implementation and

SSSNET SSSNET: Semi-Supervised Signed Network Clustering For details, please read our paper. Environment Setup Overview The project has been tested on

CPC_DeepCluster This is the implementation of "SELF SUPERVISED REPRESENTATION LEARNING WITH DEEP CLUSTERING FOR ACOUSTIC UNIT DISCOVERY FROM RAW SPEEC

Motif-based Graph Self-Supervised Learning for Molecular Property Prediction Official Pytorch implementation of NeurIPS'21 paper "Motif-based Graph Se

Corp-Rel is a PoC of Corpartion Relationship Knowledge Graph System. It's built on top of the Open Source Graph Database: Nebula Graph with a dataset

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

Multi-modal Interaction Graph Convolutioal Network for Temporal Language Localization in Videos Official implementation for Multi-Modal Interaction Gr

MMSceneGraph Introduction MMSceneneGraph is an open source code hub for scene graph generation as well as supporting downstream tasks based on the sce

3D Infomax improves GNNs for Molecular Property Prediction Video | Paper We pre-train GNNs to understand the geometry of molecules given only their 2D

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

AASIST This repository provides the overall framework for training and evaluating audio anti-spoofing systems proposed in 'AASIST: Audio Anti-Spoofing

DSIG Deep Structured Instance Graph for Distilling Object Detectors Authors: Yixin Chen, Pengguang Chen, Shu Liu, Liwei Wang, Jiaya Jia. [pdf] [slide]

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

Permute Me Softly: Learning Soft Permutations for Graph Representations

Tribuo - A Java prediction library (v4.1) Tribuo is a machine learning library in Java that provides multi-class classification, regression, clusterin

Relation Prediction as an Auxiliary Training Objective for Knowledge Base Completion This repo provides the code for the paper Relation Prediction as

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A framework for evaluating Knowledge Graph Embedding Models in a fine-grained manner.

GNNLens2 is an interactive visualization tool for graph neural networks (GNN).

DGCNN is the author's re-implementation of Dynamic Graph CNN, which achieves state-of-the-art performance on point-cloud-related high-level tasks including category classification, semantic segmentation and part segmentation.

Correlation Explanation Methods Official implementation of linear correlation explanation (linear CorEx) and temporal correlation explanation (T-CorEx

IGMTF The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting". Requirements The framework

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

GLaRA: Graph-based Labeling Rule Augmentation for Weakly Supervised Named Entity Recognition

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

Graphlevel-SSL Overview Apply Graph Self-Supervised Learning methods to graph-level task(TUDataset, MolculeNet Dataset). It is unified framework to co

Dynamic Attentive Graph Learning for Image Restoration This repository is for GATIR introduced in the following paper: Chong Mou, Jian Zhang, Zhuoyuan

SE Aggregation This is the implementation for Rethinking High-order Graph Convolutional Networks. Here we show the codes for citation networks as an e

Multilingual Latent Dirichlet Allocation (LDA) Pipeline This project is for text clustering using the Latent Dirichlet Allocation (LDA) algorithm. It

AAGCN-ACSA EMNLP 2021 Introduction This repository was used in our paper: Beta Distribution Guided Aspect-aware Graph for Aspect Category Sentiment An

Pyan takes one or more Python source files, performs a (rather superficial) static analysis, and constructs a directed graph of the objects in the combined source, and how they define or use each other. The graph can be output for rendering by GraphViz or yEd.

DeepPanoContext (DPC) [Project Page (with interactive results)][Paper] DeepPanoContext: Panoramic 3D Scene Understanding with Holistic Scene Context G

This is an open-source toolkit for Heterogeneous Graph Neural Network(OpenHGNN) based on DGL [Deep Graph Library] and PyTorch.

CTR-GCN This repo is the official implementation for Channel-wise Topology Refinement Graph Convolution for Skeleton-Based Action Recognition. The pap

MVGCN MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks. Developer: Fu Hait

EEND-vector clustering The EEND-vector clustering (End-to-End-Neural-Diarization-vector clustering) is a speaker diarization framework that integrates

Adaptive Graph Convolution for Point Cloud Analysis This repository contains the implementation of AdaptConv for point cloud analysis. Adaptive Graph

Graph2Pix: A Graph-Based Image to Image Translation Framework Installation Install the dependencies in env.yml $ conda env create -f env.yml $ conda a

Single Node Injection Attack against Graph Neural Networks This repository is our Pytorch implementation of our paper: Single Node Injection Attack ag

ANEMONE A PyTorch implementation of "ANEMONE: Graph Anomaly Detection with Multi-Scale Contrastive Learning", CIKM-21 Dependencies python==3.6.1 dgl==

近年来，图计算在搜索、推荐和风控等场景中获得显著的效果，但也面临超大规模异构图训练，与现有的深度学习框架Tensorflow和PyTorch结合等难题。 Galileo（伽利略）是一个图深度学习框架，具备超大规模、易使用、易扩展、高性能、双后端等优点，旨在解决超大规模图算法在工业级场景的落地难题，提

✨A Python framework to explore, label, and monitor data for NLP projects

ZSL-KG is a general-purpose zero-shot learning framework with a novel transformer graph convolutional network (TrGCN) to learn class representa

GraphKer Open Source Tool - Cybersecurity Graph Database in Neo4j |G|r|a|p|h|K|e|r| { open source tool for a cybersecurity graph database in neo4j } W

COTREC Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'. Requirements: Python 3.7, Pytorch 1.6.0 Best Hype

Simple-Kmeans-Clustering-Algorithm Abstract K-means is a centroid-based algorithm, or a distance-based algorithm, where we calculate the distances to

MWPToolkit is a PyTorch-based toolkit for Math Word Problem (MWP) solving. It is a comprehensive framework for research purpose that integrates popular MWP benchmark datasets and typical deep learning-based MWP algorithms.

Poplar Implementation of Bundle Adjustment using Gaussian Belief Propagation on Graphcore's IPU Implementation of CVPR 2020 paper: Bundle Adjustment o

Simple Keyword Clusterer A simple machine learning package to cluster keywords in higher-level groups. Example: "Senior Frontend Engineer" -- "Fronte

SGLKT-VisDial Pytorch Implementation for the paper: Reasoning Visual Dialog with Sparse Graph Learning and Knowledge Transfer Gi-Cheon Kang, Junseok P

GraphGT: Machine Learning Datasets for Graph Generation and Transformation Dataset Website | Paper Installation Using pip To install the core environm

Differentiable Factor Graph Optimization for Learning Smoothers Overview Status Setup Datasets Training Evaluation Acknowledgements Overview Code rele

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Bag of Tricks for Training Deeper Graph Neural Networks: A Comprehensive Benchmark Study Codes for [Preprint] Bag of Tricks for Training Deeper Graph

Filtration Curves for Graph Representation This repository provides the code from the KDD'21 paper Filtration Curves for Graph Representation. Depende

MERIT A PyTorch implementation of our IJCAI-21 paper Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learning. Depen

Graph-Based Local Trajectory Planner The graph-based local trajectory planner is python-based and comes with open interfaces as well as debug, visuali

SpiderFoot Neo4j Tools Import, visualize, and analyze SpiderFoot OSINT data in Neo4j, a graph database Step 1: Installation NOTE: This installs the sf

SIGIR2021-EGLN The implement of paper "Enhanced Graph Learning for Collaborative Filtering via Mutual Information Maximization" Neural graph based Col

Framework overview This library allows to quickly implement different architectures based on Reservoir Computing (the family of approaches popularized

Torch-RGCN Torch-RGCN is a PyTorch implementation of the RGCN, originally proposed by Schlichtkrull et al. in Modeling Relational Data with Graph Conv

README.md shall be finished soon. WSSGG 0 Overview 1 Installation 1.1 Faster-RCNN 1.2 Language Parser 1.3 GloVe Embeddings 2 Settings 2.1 VG-GT-Graph

Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting Official PyTorch implementation of the paper: Improving Graph Neural Net

Graph ConvNets in PyTorch October 15, 2017 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbresson

Graph Convolutional Networks in PyTorch PyTorch implementation of Graph Convolutional Networks (GCNs) for semi-supervised classification [1]. For a hi

PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for

Graph Convolutional Networks for Hyperspectral Image Classification Danfeng Hong, Lianru Gao, Jing Yao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot T

Heterogeneous Graph Benchmark Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks. Roadmap We organize our repo by task, and on

[CVPR2021] Domain Consensus Clustering for Universal Domain Adaptation [Paper] Prerequisites To install requirements: pip install -r requirements.txt

Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl

A powerful and flexible machine learning platform for drug discovery

CG-MuAlign A reference implementation for "Collective Multi-type Entity Alignment Between Knowledge Graphs", published in WWW 2020. If you find our pa

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.

PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL components from published papers, standardized evaluation, and experiment management.

中文开放信息抽取系统, open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)