Python Graph-clustering Resources

Dagon - An Asynchronous Task Graph Execution Engine Dagon is a job execution sys

Simple implementation of Equivariant GNN A short implementation of E(n) Equivariant Graph Neural Networks for HOMO energy prediction. Just 50 lines of

This is the course project of AI3602: Data Mining of SJTU. Group Members include Jinghao Feng, Mingyang Jiang and Wenzhong Zheng.

Table of Contents Introduction Installation Examples Pre-trained models Quick start using colab JARVIS-ALIGNN webapp Peformances on a few datasets Use

Graph-to-3D This is the official implementation of the paper Graph-to-3d: End-to-End Generation and Manipulation of 3D Scenes Using Scene Graphs | arx

ReceptiveFieldAnalysisToolbox This is RFA-Toolbox, a simple and easy-to-use library that allows you to optimize your neural network architectures usin

Graph-based CTR prediction This is a repository designed for graph-based CTR prediction methods, it includes our graph-based CTR prediction methods: F

Python Machine Learning Jupyter Notebooks (ML website) Dr. Tirthajyoti Sarkar, Fremont, California (Please feel free to connect on LinkedIn here) Also

Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.

Security audit Python project dependencies against security advisory databases.

PYGON A Graph Neural Network Tool for Recovering Dense Sub-graphs in Random Dense Graphs. Installation This code requires to install and run the graph

OutliersSlidingWindows A Java implementation of the experiments for the paper "k-Center Clustering with Outliers in Sliding Windows" Dataset generatio

clustering-laion400m Script and models for clustering LAION-400m CLIP embeddings. Models were fit on the first million or so image embeddings. A subje

Intro Real-time object detection and classification. Paper: version 1, version 2. Read more about YOLO (in darknet) and download weight files here. In

GraphFPN: Graph Feature Pyramid Network for Object Detection Download graph-FPN-main.zip For training , run: python train.py For test with Graph_fpn

FlatGCN This is the official Pytorch-version code of FlatGCN (Flattened Graph Convolutional Networks for Recommendation, submitted to ICASSP2022). Req

This application aims to read all wifi passwords and visualizes the complexity in graph formation by taking into account several criteria and help you generate new random passwords.

TICC TICC is a python solver for efficiently segmenting and clustering a multivariate time series. It takes as input a T-by-n data matrix, a regulariz

Welcome to the dtw-python package Comprehensive implementation of Dynamic Time Warping algorithms. DTW is a family of algorithms which compute the loc

pypmc pypmc is a python package focusing on adaptive importance sampling. It can be used for integration and sampling from a user-defined target densi

DAT8 Course Repository Course materials for General Assembly's Data Science course in Washington, DC (8/18/15 - 10/29/15). Instructor: Kevin Markham (

GAT - Graph Attention Network (PyTorch) 💻 + graphs + 📣 = ❤️ This repo contains a PyTorch implementation of the original GAT paper ( 🔗 Veličković et

Learn how to process, classify, cluster, summarize, understand syntax, semantics and sentiment of text data with the power of Python! This repository contains code and datasets used in my book, Text Analytics with Python published by Apress/Springer.

Skeletal-GNN Code for "Learning Skeletal Graph Neural Networks for Hard 3D Pose Estimation" ICCV'21 Various deep learning techniques have been propose

Spatio-Temporal Dynamic Inference Network for Group Activity Recognition The source codes for ICCV2021 Paper: Spatio-Temporal Dynamic Inference Networ

Scene Graph Generation Object Detections Ground truth Scene Graph Generated Scene Graph In this visualization, woman sitting on rock is a zero-shot tr

Documentation | Paper [JMLR] | Tutorials | Benchmarks | Examples DIG: Dive into Graphs is a turnkey library for graph deep learning research. Why DIG?

Introduction This is a crawler I wrote in Python using the APIs of Telethon months ago. This tool was not intended to be publicly available for a numb

d o t m o t i f Find graph motifs using intuitive notation DotMotif is a library that identifies subgraphs or motifs in a large graph. It looks like t

Unsupervised Learning - K-Means Clustering and Hierarchical Clustering - The Heritage Foundation's Economic Freedom Index Analysis 2019 - By David Sal

Multi-level Disentanglement Graph Neural Network (MD-GNN) This is a PyTorch implementation of the MD-GNN, and the code includes the following modules:

✔️ Linux ✔️ OS X ❌ Windows (#39) Welcome to graph-app-kit Turn your graph data into a secure and interactive visual graph app in 15 minutes! Why This

This repository contains code which implements the Stochastic Gaussian Mixture Model (S-GMM) for event-based datasets Dependencies CMake Premake4 Blaz

mask-uncertainty-in-HSI This repository contains the testing code and pre-trained models for the paper Calibrated Hyperspectral Image Reconstruction v

Fast-Partial-Ranking-MNL This repo provides a PyTorch implementation for the CopulaGNN models as described in the following paper: Fast Learning of MN

cluster-link-prediction This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Predict

Machine learning approaches for localized lockdown, subnotification analysis and cases forecasting in São Paulo state counties during COVID-19 pandemi

Overview Customer Segmentation is one the most important applications of unsupervised learning. Using clustering techniques, companies can identify th

Glyth Graph Revision for 0.01 A simple, yet versatile, package for graphing equations on a 2-dimensional text canvas List of contents: Brief Introduct

benchmark_spaces Benchmarks of how well different two dimensional spaces work fo

A collection of graph classification methods, covering embedding, deep learning, graph kernel and factorization papers

NLP T5 Project proposal Topic Modeling and Clustering of News-Articles-and-Essays Students: Nasser Alshehri Abdullah Bushnag Abdulrhman Alqurashi OVER

Total number of Spanning Trees in a Graph This is a python script just written f

Strongly local p-norm-cut algorithms for semi-supervised learning and local graph clustering

Confidence-based Graph Convolutional Networks for Semi-Supervised Learning Source code for AISTATS 2019 paper: Confidence-based Graph Convolutional Ne

Neural Structured Learning in TensorFlow Neural Structured Learning (NSL) is a new learning paradigm to train neural networks by leveraging structured

Graph-based joint model with Nonignorable Missingness (GNM) This is a Keras implementation of the GNM model in paper ’Graph-Based Semi-Supervised Lear

G3NN This repo provides a pytorch implementation for the 4 instantiations of the flexible generative framework as described in the following paper: A

Graph Contrastive Learning with Augmentations PyTorch implementation for Graph Contrastive Learning with Augmentations [poster] [appendix] Yuning You*

CCGL: Contrastive Cascade Graph Learning This repo provides a reference implementation of Contrastive Cascade Graph Learning (CCGL) framework as descr

GitHub Activity Generator A script that helps you instantly generate a beautiful GitHub Contributions Graph for the last year. Before 😐 😶 😒 After ?

GCC: Graph Contrastive Coding for Graph Neural Network Pre-Training Original implementation for paper GCC: Graph Contrastive Coding for Graph Neural N

GRACE The official PyTorch implementation of deep GRAph Contrastive rEpresentation learning (GRACE). For a thorough resource collection of self-superv

GMI (Graphical Mutual Information) Graph Representation Learning via Graphical Mutual Information Maximization (Peng Z, Huang W, Luo M, et al., WWW 20

SelfGNN A PyTorch implementation of "SelfGNN: Self-supervised Graph Neural Networks without explicit negative sampling" paper, which will appear in Th

Pretraining on Dynamic Graph Neural Networks Our article is PT-DGNN and the code is modified based on GPT-GNN Requirements python 3.6 Ubuntu 18.04.5 L

DGI Deep Graph Infomax (Veličković et al., ICLR 2019): https://arxiv.org/abs/1809.10341 Overview Here we provide an implementation of Deep Graph Infom

Unsupervised Attributed Multiplex Network Embedding (DMGI) Overview Nodes in a multiplex network are connected by multiple types of relations. However

Heterogeneous-Deep-Graph-Infomax Parameter Setting: HDGI-A: Node-level dimension: 16 Attention head: 4 Semantic-level attention vector: 8 learning rat

Subg-Con Sub-graph Contrast for Scalable Self-Supervised Graph Representation Learning (Jiao et al., ICDM 2020): https://arxiv.org/abs/2009.10273 Over

Graph-InfoClust-GIC [PAKDD 2021] PAKDD'21 version Graph InfoClust: Maximizing Coarse-Grain Mutual Information in Graphs Preprint version Graph InfoClu

MC Outpost A Python server and client application that tracks player session times and server status About MC Outpost provides a session graph and ser

PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a

Block Modeling-Guided Graph Convolutional Neural Networks This repository contains the demo code of the paper: Block Modeling-Guided Graph Convolution

InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization Authors: Fan-yun Sun, Jordan Hoffm

NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).

SelfTask-GNN A PyTorch implementation of "Self-supervised Learning on Graphs: Deep Insights and New Directions". [paper] In this paper, we first deepe

Graph-Bert Source code of "Graph-Bert: Only Attention is Needed for Learning Graph Representations". Please check the script.py as the entry point. We

Pretrain-Recsys This is our Tensorflow implementation for our WSDM 2021 paper: Bowen Hao, Jing Zhang, Hongzhi Yin, Cuiping Li, Hong Chen. Pre-Training

SLAPS-GNN This repo contains the implementation of the model proposed in SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networks

G-Bert Pre-training of Graph Augmented Transformers for Medication Recommendation Intro G-Bert combined the power of Graph Neural Networks and BERT (B

GPT-GNN: Generative Pre-Training of Graph Neural Networks GPT-GNN is a pre-training framework to initialize GNNs by generative pre-training. It can be

Self-supervised Auxiliary Learning with Meta-paths for Heterogeneous Graphs This repository is the implementation of SELAR. Dasol Hwang* , Jinyoung Pa

deeper_insights_into_GCNs Deeper insights into graph convolutional networks for semi-supervised learning References data and utils.py come from Implem

Reference Code for AAAI-20 paper "Multi-Stage Self-Supervised Learning for Graph Convolutional Networks on Graphs with Few Labels" Please refer to htt

Self-supervised edge features for improved Graph Neural Network training Data availability: Here is a link to the raw data for the organoids dataset.

DrRepair: Learning to Repair Programs from Error Messages This repo provides the source code & data of our paper: Graph-based, Self-Supervised Program

Implementation for the papers: Self-Supervised Hyperboloid Representations from Logical Queries over Knowledge Graphs, Nurendra Choudhary, Nikhil Rao,

Self-labelling via simultaneous clustering and representation learning 🆗 🆗 🎉 NEW models (20th August 2020): Added standard SeLa pretrained torchvis

Learning to Classify Images without Labels This repo contains the Pytorch implementation of our paper: SCAN: Learning to Classify Images without Label

SAG-DTA The code is the implementation for the paper 'SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network'. Requirements py

Cross Domain Facial Expression Recognition Benchmark Implementation of papers: Cross-Domain Facial Expression Recognition: A Unified Evaluation Benchm

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

MS Graph API authentication example with Fast API What it is & does This is a simple python service/webapp, using FastAPI with server side rendering,

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

pysal/spaghetti SPAtial GrapHs: nETworks, Topology, & Inference Spaghetti is an open-source Python library for the analysis of network-based spatial d

tfgraphviz tfgraphviz is a module to visualize a TensorFlow's data flow graph like TensorBoard using Graphviz. tfgraphviz enables to provide a visuali

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

Build an Amazon SageMaker Pipeline to Transform Raw Texts to A Knowledge Graph This repository provides a pipeline to create a knowledge graph from ra

PyNode Next A complete rewrite of PyNode for the modern era. Up to five times faster than the original PyNode. PyNode Next allows you to easily create

This repository contains sample code scripts for creating awesome data visualizations from scratch using different python libraries (such as matplotli

UX Analytics & A/B Testing

Transcript Analysis - Graph + NLP This program extracts insights from Zoom Meeting Transcripts (.vtt) using TigerGraph and NLTK. In order to run this

DAG_Generator Random Directed Acyclic Graph Generator verison1.0 简介 工作流通常由DAG（有向无环图）来定义，其中每个计算任务$T_i$由一个顶点(node,task,vertex)表示。同时，任务之间的每个数据或控制依赖性由一条加权

Multimodal Trajectory Prediction Conditioned on Lane-Graph Traversals This repository contains code for "Multimodal trajectory prediction conditioned

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

Neointerface - Neo4j made easy for Python programmers! A Python interface to use the Neo4j graph database, and simplify its use. class NeoInterface: C

HyFactor Graph-based architectures are becoming increasingly popular as a tool for structure generation. Here, we introduce a novel open-source archit

ForceAtlas2 for Python A port of Gephi's Force Atlas 2 layout algorithm to Python 2 and Python 3 (with a wrapper for NetworkX and igraph). This is the