Python Nlp-medical-abstract-pubmed-rct Resources

This repository implements a variety of sequence model architectures from scratch in PyTorch. Effort has been put to make the code well structured so that it can serve as learning material. The training loop implements the learner design pattern from fast.ai in pure PyTorch, with access to the loop provided through callbacks. Detailed logging and graphs are also provided with python logging and wandb. Additional implementations will be added.

This repository contains slides for the course "20-00-0947: Deep Learning for Natural Language Processing" (Technical University of Darmstadt, Summer term 2021).

Cloud-native neural search framework for any kind of data

End to End Automatic Speech Recognition In this repository, I have developed an end to end Automatic speech recognition project. I have developed the

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus General info This is

Markup is an online annotation tool that can be used to transform unstructured documents into structured formats for NLP and ML tasks, such as named-entity recognition. Markup learns as you annotate in order to predict and suggest complex annotations. Markup also provides integrated access to existing and custom ontologies, enabling the prediction and suggestion of ontology mappings based on the text you're annotating.

Pipeline For NLP with Bloom's Taxonomy Using Improved Question Classification and Question Generation using Deep Learning This repository contains all

CausalNLP CausalNLP is a practical toolkit for causal inference with text as treatment, outcome, or "controlled-for" variable. Install pip install -U

Unifying Cross-Lingual Semantic Role Labeling with Heterogeneous Linguistic Resources Description This is the repository for the paper Unifying Cross-

Styleformer A Neural Language Style Transfer framework to transfer natural language text smoothly between fine-grained language styles like formal/cas

Smaller Multilingual Transformers This repository shares smaller versions of multilingual transformers that keep the same representations offered by t

🌳 Fingerprinting Fine-tuned Language Models in the wild This is the code and dataset for our ACL 2021 (Findings) Paper - Fingerprinting Fine-tuned La

Explainable Fact Checking: A Survey This repository and the accompanying webpage contain resources for the paper "Explainable Fact Checking: A Survey"

SparseML is a toolkit that includes APIs, CLIs, scripts and libraries that apply state-of-the-art sparsification algorithms such as pruning and quantization to any neural network. General, recipe-driven approaches built around these algorithms enable the simplification of creating faster and smaller models for the ML performance community at large.

Clairvoyance: A Pipeline Toolkit for Medical Time Series Authors: van der Schaar Lab This repository contains implementations of Clairvoyance: A Pipel

A curated list of awesome resources related to Semantic Search🔎 and Semantic Similarity tasks.

IVR-Chatbot Achievements 🏆 Team Uhtred won the Maverick 2.0 Bot-a-thon 2021 organized by AbInbev India. ❓ Problem Statement As we all know that, lot

Medical Image Segmentation using Squeeze-and-Expansion Transformers Introduction This repository contains the code of the IJCAI'2021 paper 'Medical Im

SapBERT: Self-alignment pretraining for BERT This repo holds code for the SapBERT model presented in our NAACL 2021 paper: Self-Alignment Pretraining

PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.

ViT-V-Net: Vision Transformer for Volumetric Medical Image Registration keywords: vision transformer, convolutional neural networks, image registratio

MILES Multilingual Lexical Simplifier Explore the docs » Read LSBert Paper · Report Bug · Request Feature About The Project MILES is a multilingual te

A curated list of awesome anomaly detection works in medical imaging, inspired by the other awesome-* initiatives.

R²SQL The PyTorch implementation of paper Dynamic Hybrid Relation Network for Cross-Domain Context-Dependent Semantic Parsing. (AAAI 2021) Requirement

BERT-pytorch Pytorch implementation of Google AI's 2018 BERT, with simple annotation BERT 2018 BERT: Pre-training of Deep Bidirectional Transformers f

jiant is an NLP toolkit The multitask and transfer learning toolkit for natural language processing research Why should I use jiant? jiant supports mu

Quick NLP Quick NLP is a deep learning nlp library inspired by the fast.ai library It follows the same api as fastai and extends it allowing for quick

This repo is deprecated. Please find the updated package here. https://github.com/EdGENetworks/anuvada Anuvada: Interpretable Models for NLP using PyT

Jina is geared towards building search systems for any kind of data, including text, images, audio, video and many more. With the modular design & multi-layer abstraction, you can leverage the efficient patterns to build the system by parts, or chaining them into a Flow for an end-to-end experience.

Contextual Action Language Model (CALM) and the ClubFloyd Dataset Code and data for paper Keep CALM and Explore: Language Models for Action Generation

QuickAI is a Python library that makes it extremely easy to experiment with state-of-the-art Machine Learning models.

QuickAI is a Python library that makes it extremely easy to experiment with state-of-the-art Machine Learning models.

COVID-19 outbreak has become a global pandemic. NLP researchers are fighting the epidemic in their own way.

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

OptiPrompt This is the PyTorch implementation of the paper Factual Probing Is [MASK]: Learning vs. Learning to Recall. We propose OptiPrompt, a simple

🤗 The largest hub of ready-to-use NLP datasets for ML models with fast, easy-to-use and efficient data manipulation tools

NLPretext packages in a unique library all the text preprocessing functions you need to ease your NLP project.

ExplainaBoard: An Explainable Leaderboard for NLP Introduction | Website | Download | Backend | Paper | Video | Bib Introduction ExplainaBoard is an i

End-to-End Coreference Resolution with Different Higher-Order Inference Methods This repository contains the implementation of the paper: Revealing th

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

SimCSE: Simple Contrastive Learning of Sentence Embeddings This repository contains the code and pre-trained models for our paper SimCSE: Simple Contr

SpikeX is a collection of pipes ready to be plugged in a spaCy pipeline. It aims to help in building knowledge extraction tools with almost-zero effort.

Dice Loss for NLP Tasks This repository contains code for Dice Loss for Data-imbalanced NLP Tasks at ACL2020. Setup Install Package Dependencies The c

GraphMask This repository contains an implementation of GraphMask, the interpretability technique for graph neural networks presented in our ICLR 2021

Labelled data remains a scarce resource in many practical NLP scenarios. This is especially the case when working with resource-poor languages (or text domains), or when using task-specific labels without pre-existing datasets. The only available option is often to collect and annotate texts by hand, which is expensive and time-consuming.

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

japanese-gpt2 This repository provides the code for training Japanese GPT-2 models. This code has been used for producing japanese-gpt2-medium release

FedNLP is a research-oriented benchmarking framework for advancing federated learning (FL) in natural language processing (NLP). It uses FedML repository as the git submodule. In other words, FedNLP only focuses on adavanced models and dataset, while FedML supports various federated optimizers (e.g., FedAvg) and platforms (Distributed Computing, IoT/Mobile, Standalone).

NLP算法 说明 此算法仓库包括文本分类、序列标注、关系抽取、文本匹配、文本相似度匹配这五个主流NLP任务，涉及到22个相关的模型算法。 框架结构 文件结构 all_models ├── Base_line │   ├── __init__.py │   ├── base_data_process.

Text detection and recognition This repository contains tool which allow to detect region with text and translate it one by one. Description Two pretr

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

Awesome-NLP-Research (ANLP)

FasySeq FasySeq is a shorthand as a Fast and easy sequential modeling toolkit. It aims to provide a seq2seq model to researchers and developers, which

中文空间语义理解评测 最新消息 2021-04-10 🚩 排行榜发布： Leaderboard 2021-04-05 基线系统发布： SpaCE2021-Baseline 2021-04-05 开放数据提交： 提交结果 2021-04-01 开放报名： 我要报名 2021-04-01 数据集 pa

pypostal These are the official Python bindings to https://github.com/openvenues/libpostal, a fast statistical parser/normalizer for street addresses

Automatic neural network visualizations generated in your browser!

Tool for visualizing attention in the Transformer model (BERT, GPT-2, Albert, XLNet, RoBERTa, CTRL, etc.)

Cutoff: A Simple Data Augmentation Approach for Natural Language This repository contains source code necessary to reproduce the results presented in

Storium GPT-2 Models This is the official repository for the GPT-2 models described in the EMNLP 2020 paper [STORIUM: A Dataset and Evaluation Platfor

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

A collection of loss functions for medical image segmentation

DensePhrases DensePhrases provides answers to your natural language questions from the entire Wikipedia in real-time. While it efficiently searches th

SASSnet Code for paper: Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Images(MICCAI 2020) Our code is origin from UA-MT You can fin

Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me

Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.

News SRU++, a new SRU variant, is released. [tech report] [blog] The experimental code and SRU++ implementation are available on the dev branch which

SpeedTorch Faster pinned CPU tensor - GPU Pytorch variabe transfer and GPU tensor - GPU Pytorch variable transfer, in certain cases. Update 9-29-1

An easier way to build neural search on the cloud Jina is a deep learning-powered search framework for building cross-/multi-modal search systems (e.g

SPLASH: Semantic Parsing with Language Assistance from Humans SPLASH is dataset for the task of semantic parse correction with natural language feedba

Reduce T5 model size by 3X and increase the inference speed up to 5X. Install Usage Details Functionalities Benchmarks Onnx model Quantized onnx model

capbot-siic Repository to hold code for the cap-bot varient that is being presented at the SIIC Defence Hackathon 2021. Problem Inspiration A plethora

summarizers summarizers is package for controllable summarization based CTRLsum. currently, we only supports English. It doesn't work in other languag

FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space by Quande Liu, Cheng Chen, Ji

DeLFT DeLFT (Deep Learning Framework for Text) is a Keras and TensorFlow framework for text processing, focusing on sequence labelling (e.g. named ent

Detect the language of text. What’s so cool about franc? franc can support more languages(†) than any other library franc is packaged with support for

PICCL: Philosophical Integrator of Computational and Corpus Libraries PICCL offers a workflow for corpus building and builds on a variety of tools. Th

Text detection and recognition This repository contains tool which allow to detect region with text and translate it one by one. Description Two pretr

whatthelang Lightning Fast Language Prediction 🚀 Dependencies The dependencies can be installed using the requirements.txt file: $ pip install -r req

Quick Info this library tries to solve language detection of very short words and phrases, even shorter than tweets makes use of both statistical and

引用 本项目模型BiLSTM+CRF参考论文：http://www.aclweb.org/anthology/N16-1030 ,IDCNN+CRF参考论文：https://arxiv.org/abs/1702.02098 构建 安装好bazel代码构建工具，安装好tensorflow（目前本项目需

pubmed-mapper: A Python Library that map PubMed XML to Python object 中文文档 1. Philosophy view UML Programmatically access PubMed article is a common ta

Contract Understanding Atticus Dataset This repository contains code for the Contract Understanding Atticus Dataset (CUAD), a dataset for legal contra

CoTr: Efficient 3D Medical Image Segmentation by bridging CNN and Transformer This is the official pytorch implementation of the CoTr: Paper: CoTr: Ef

Contract Understanding Atticus Dataset This repository contains code for the Contract Understanding Atticus Dataset (CUAD), a dataset for legal contra

【关于 NLP】那些你不知道的事 作者：杨夕、芙蕖、李玲、陈海顺、twilight、LeoLRH、JimmyDU、艾春辉、张永泰、金金金 介绍 本项目是作者们根据个人面试和经验总结出的自然语言处理(NLP)面试准备的学习笔记与资料，该资料目前包含 自然语言处理各领域的 面试题积累。 目录架构 一、【

A very simple framework for state-of-the-art NLP. Developed by Humboldt University of Berlin and friends. Flair is: A powerful NLP library. Flair allo

ELI5 ELI5 is a Python package which helps to debug machine learning classifiers and explain their predictions. It provides support for the following m

GluonNLP: Your Choice of Deep Learning for NLP GluonNLP is a toolkit that helps you solve NLP problems. It provides easy-to-use tools that helps you l

tensorlm Generate Shakespeare poems with 4 lines of code. Installation tensorlm is written in / for Python 3.4+ and TensorFlow 1.1+ pip3 install tenso

torchtext This repository consists of: torchtext.datasets: The raw text iterators for common NLP datasets torchtext.data: Some basic NLP building bloc

DaCy: A SpaCy NLP Pipeline for Danish DaCy is a Danish preprocessing pipeline trained in SpaCy. At the time of writing it has achieved State-of-the-Ar

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

This open source project serves two purposes. Collection and evaluation of a Question Answering dataset to improve existing QA/search methods - COVID-

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

Summarization, translation, Q&A, text generation and more at blazing speed using a T5 version implemented in ONNX. This package is still in alpha stag

NeuroNER NeuroNER is a program that performs named-entity recognition (NER). Website: neuroner.com. This page gives step-by-step instructions to insta

pyfasttext Warning! pyfasttext is no longer maintained: use the official Python binding from the fastText repository: https://github.com/facebookresea