832 Repositories
Python nlp-medical-abstract-pubmed-rct Libraries
Official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics
ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s
Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018
UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i
Dataset for the Research2Clinics @ NeurIPS 2021 Paper: What Do You See in this Patient? Behavioral Testing of Clinical NLP Models
Behavioral Testing of Clinical NLP Models This repository contains code for testing the behavior of clinical prediction models based on patient letter
Behavioral Testing of Clinical NLP Models
Behavioral Testing of Clinical NLP Models This repository contains code for testing the behavior of clinical prediction models based on patient letter
Code for A Volumetric Transformer for Accurate 3D Tumor Segmentation
VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen
Source Code and data for my paper titled Linguistic Knowledge in Data Augmentation for Natural Language Processing: An Example on Chinese Question Matching
Description The source code and data for my paper titled Linguistic Knowledge in Data Augmentation for Natural Language Processing: An Example on Chin
WSDM‘2022: Knowledge Enhanced Sports Game Summarization
Knowledge Enhanced Sports Game Summarization Cooming Soon! :) Data will be released after approval process. Code will be published once the author of
Haystack is an open source NLP framework that leverages Transformer models.
Haystack is an end-to-end framework that enables you to build powerful and production-ready pipelines for different search use cases. Whether you want
KakaoBrain KoGPT (Korean Generative Pre-trained Transformer)
KoGPT KoGPT (Korean Generative Pre-trained Transformer) https://github.com/kakaobrain/kogpt https://huggingface.co/kakaobrain/kogpt Model Descriptions
Conversational text Analysis using various NLP techniques
PyConverse Let me try first Installation pip install pyconverse Usage Please try this notebook that demos the core functionalities: basic usage noteb
A Facebook Messenger Chatbot using NLP
A Facebook Messenger Chatbot using NLP This project is about creating a messenger chatbot using basic NLP techniques and models like Logistic Regressi
A system used to detect whether a person is wearing a medical mask or not.
Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make
Package to compute Mauve, a similarity score between neural text and human text. Install with `pip install mauve-text`.
MAUVE MAUVE is a library built on PyTorch and HuggingFace Transformers to measure the gap between neural text and human text with the eponymous MAUVE
Make differentially private training of transformers easy for everyone
private-transformers This codebase facilitates fast experimentation of differentially private training of Hugging Face transformers. What is this? Why
Fine-grained Control of Image Caption Generation with Abstract Scene Graphs
Faster R-CNN pretrained on VisualGenome This repository modifies maskrcnn-benchmark for object detection and attribute prediction on VisualGenome data
A curated list of awesome papers for Semantic Retrieval (TOIS Accepted: Semantic Models for the First-stage Retrieval: A Comprehensive Review).
A curated list of awesome papers for Semantic Retrieval (TOIS Accepted: Semantic Models for the First-stage Retrieval: A Comprehensive Review).
Automated question generation and question answering from Turkish texts using text-to-text transformers
Turkish Question Generation Offical source code for "Automated question generation & question answering from Turkish texts using text-to-text transfor
🧪 Cutting-edge experimental spaCy components and features
spacy-experimental: Cutting-edge experimental spaCy components and features This package includes experimental components and features for spaCy v3.x,
R interface to fast.ai
R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod
Extension to fastai for volumetric medical data
FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari
Additional functionality for use with fastai’s medical imaging module
fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g
An easy to use Natural Language Processing library and framework for predicting, training, fine-tuning, and serving up state-of-the-art NLP models.
Welcome to AdaptNLP A high level framework and library for running, training, and deploying state-of-the-art Natural Language Processing (NLP) models
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.
pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of
State of the art faster Natural Language Processing in Tensorflow 2.0 .
tf-transformers: faster and easier state-of-the-art NLP in TensorFlow 2.0 ****************************************************************************
PyCaret is an open-source, low-code machine learning library in Python that automates machine learning workflows.
An open-source, low-code machine learning library in Python 🚀 Version 2.3.5 out now! Check out the release notes here. Official • Docs • Install • Tu
A fast, efficient universal vector embedding utility package.
Magnitude: a fast, simple vector embedding utility library A feature-packed Python package and vector storage file format for utilizing vector embeddi
Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP"
DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is
Backprop makes it simple to use, finetune, and deploy state-of-the-art ML models.
Backprop makes it simple to use, finetune, and deploy state-of-the-art ML models. Solve a variety of tasks with pre-trained models or finetune them in
TransMorph: Transformer for Medical Image Registration
TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati
Implementation of GGB color space
GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of
A keras-based real-time model for medical image segmentation (CFPNet-M)
CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat
Stanza: A Python NLP Library for Many Human Languages
Official Stanford NLP Python Library for Many Human Languages
Utilities for preprocessing text for deep learning with Keras
Note: This utility is really old and is no longer maintained. You should use keras.layers.TextVectorization instead of this. Utilities for pre-process
How to use TensorLayer
How to use TensorLayer While research in Deep Learning continues to improve the world, we use a bunch of tricks to implement algorithms with TensorLay
AI Toolkit for Healthcare Imaging
Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am
Predicting the usefulness of reviews given the review text and metadata surrounding the reviews.
Predicting Yelp Review Quality Table of Contents Introduction Motivation Goal and Central Questions The Data Data Storage and ETL EDA Data Pipeline Da
Multiple implementations for abstractive text summurization , using google colab
Text Summarization models if you are able to endorse me on Arxiv, i would be more than glad https://arxiv.org/auth/endorse?x=FRBB89 thanks This repo i
NLP and Text Generation Experiments in TensorFlow 2.x / 1.x
Code has been run on Google Colab, thanks Google for providing computational resources Contents Natural Language Processing(自然语言处理) Text Classificati
XLNet: Generalized Autoregressive Pretraining for Language Understanding
Introduction XLNet is a new unsupervised language representation learning method based on a novel generalized permutation language modeling objective.
TensorFlow code and pre-trained models for BERT
BERT ***** New March 11th, 2020: Smaller BERT Models ***** This is a release of 24 smaller BERT models (English only, uncased, trained with WordPiece
Deep learning for NLP crash course at ABBYY.
Deep NLP Course at ABBYY Deep learning for NLP crash course at ABBYY. Suggested textbook: Neural Network Methods in Natural Language Processing by Yoa
nlp-tutorial is a tutorial for who is studying NLP(Natural Language Processing) using Pytorch
nlp-tutorial is a tutorial for who is studying NLP(Natural Language Processing) using Pytorch. Most of the models in NLP were implemented with less than 100 lines of code.(except comments or blank lines)
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr
Biterm Topic Model (BTM): modeling topics in short texts
Biterm Topic Model Bitermplus implements Biterm topic model for short texts introduced by Xiaohui Yan, Jiafeng Guo, Yanyan Lan, and Xueqi Cheng. Actua
Binary LSTM model for text classification
Text Classification The purpose of this repository is to create a neural network model of NLP with deep learning for binary classification of texts re
AI-powered literature discovery and review engine for medical/scientific papers
AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me
topic modeling on unstructured data in Space news articles retrieved from the Guardian (UK) newspaper using API
NLP Space News Topic Modeling Photos by nasa.gov (1, 2, 3, 4, 5) and extremetech.com Table of Contents Project Idea Data acquisition Primary data sour
Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection
Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De
Conversational text Analysis using various NLP techniques
Conversational text Analysis using various NLP techniques
Politecnico of Turin Thesis: "Implementation and Evaluation of an Educational Chatbot based on NLP Techniques"
THESIS_CAIRONE_FIORENTINO Politecnico of Turin Thesis: "Implementation and Evaluation of an Educational Chatbot based on NLP Techniques" GENERATE TOKE
Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation
UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf
ALIbaba's Collection of Encoder-decoders from MinD (Machine IntelligeNce of Damo) Lab
AliceMind AliceMind: ALIbaba's Collection of Encoder-decoders from MinD (Machine IntelligeNce of Damo) Lab This repository provides pre-trained encode
Official source for spanish Language Models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).
Spanish Language Models 💃🏻 A repository part of the MarIA project. Corpora 📃 Corpora Number of documents Number of tokens Size (GB) BNE 201,080,084
Maha is a text processing library specially developed to deal with Arabic text.
An Arabic text processing library intended for use in NLP applications Maha is a text processing library specially developed to deal with Arabic text.
Code for training and evaluation of the model from "Language Generation with Recurrent Generative Adversarial Networks without Pre-training"
Language Generation with Recurrent Generative Adversarial Networks without Pre-training Code for training and evaluation of the model from "Language G
🛠️ Tools for Transformers compression using Lightning ⚡
Bert-squeeze is a repository aiming to provide code to reduce the size of Transformer-based models or decrease their latency at inference time.
Python library for Serbian Natural language processing (NLP)
SrbAI - Python biblioteka za procesiranje srpskog jezika SrbAI je projekat prikupljanja algoritama i modela za procesiranje srpskog jezika u jedinstve
PESTO: Switching Point based Dynamic and Relative Positional Encoding for Code-Mixed Languages
PESTO: Switching Point based Dynamic and Relative Positional Encoding for Code-Mixed Languages Abstract NLP applications for code-mixed (CM) or mix-li
Integrated Semantic and Phonetic Post-correction for Chinese Speech Recognition
Integrated Semantic and Phonetic Post-correction for Chinese Speech Recognition | paper | dataset | pretrained detection model | Authors: Yi-Chang Che
Improving the robustness and performance of biomedical NLP models through adversarial training
RobustBioNLP Improving the robustness and performance of biomedical NLP models through adversarial training In this repository you can find suppliment
DataCLUE: 国内首个以数据为中心的AI测评(含模型分析报告)
DataCLUE: A Benchmark Suite for Data-centric NLP You can get the english version of README. 以数据为中心的AI测评(DataCLUE) 内容导引 章节 描述 简介 介绍以数据为中心的AI测评(DataCLUE
Source code for our EMNLP'21 paper 《Raise a Child in Large Language Model: Towards Effective and Generalizable Fine-tuning》
Child-Tuning Source code for EMNLP 2021 Long paper: Raise a Child in Large Language Model: Towards Effective and Generalizable Fine-tuning. 1. Environ
TaCL: Improving BERT Pre-training with Token-aware Contrastive Learning
TaCL: Improving BERT Pre-training with Token-aware Contrastive Learning Authors: Yixuan Su, Fangyu Liu, Zaiqiao Meng, Lei Shu, Ehsan Shareghi, and Nig
🚪✊Knock Knock: Get notified when your training ends with only two additional lines of code
Knock Knock A small library to get a notification when your training is complete or when it crashes during the process with two additional lines of co
Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018
UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i
Code for our paper "Multi-scale Guided Attention for Medical Image Segmentation"
Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image
Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation
Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement
Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation
Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor
U-Net: Convolutional Networks for Biomedical Image Segmentation
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne
Python package for Turkish Language.
PyTurkce Python package for Turkish Language. Documentation: https://pyturkce.readthedocs.io. Installation pip install pyturkce Usage from pyturkce im
KakaoBrain KoGPT (Korean Generative Pre-trained Transformer)
KoGPT KoGPT (Korean Generative Pre-trained Transformer) https://github.com/kakaobrain/kogpt https://huggingface.co/kakaobrain/kogpt Model Descriptions
Journey is a NLP-Powered Developer assistant
Journey Journey is a NLP-Powered Developer assistant Using on the powerful Natural Language Processing library Mindmeld, this projects aims to assist
ML for NLP and Computer Vision.
Sparrow is our open-source ML product. It runs on Skipper MLOps infrastructure.
We have built a Voice based Personal Assistant for people to access files hands free in their device using natural language processing.
Voice Based Personal Assistant We have built a Voice based Personal Assistant for people to access files hands free in their device using natural lang
ChirpText is a collection of text processing tools for Python 3.
ChirpText is a collection of text processing tools for Python 3. It is not meant to be a powerful tank like the popular NTLK but a small package which
JSON and CSV data for Swahili dictionary with over 16600+ words
kamusi JSON and CSV data for swahili dictionary with over 16600+ words. This repo consists of data from swahili dictionary with about 16683 words toge
A Japanese Medical Information Extraction Toolkit
JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ
NLP From Scratch Without Large-Scale Pretraining: A Simple and Efficient Framework
NLP From Scratch Without Large-Scale Pretraining This repository contains the code, pre-trained model checkpoints and curated datasets for our paper:
An open-source online reverse dictionary.
An open-source online reverse dictionary.
TaCL: Improve BERT Pre-training with Token-aware Contrastive Learning
TaCL: Improve BERT Pre-training with Token-aware Contrastive Learning
Obsei is a low code AI powered automation tool.
Obsei is a low code AI powered automation tool. It can be used in various business flows like social listening, AI based alerting, brand image analysis, comparative study and more .
🦅 Pretrained BigBird Model for Korean (up to 4096 tokens)
Pretrained BigBird Model for Korean What is BigBird • How to Use • Pretraining • Evaluation Result • Docs • Citation 한국어 | English What is BigBird? Bi
Code for Recurrent Mask Refinement for Few-Shot Medical Image Segmentation (ICCV 2021).
Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using
An open-source NLP library: fast text cleaning and preprocessing.
An open-source NLP library: fast text cleaning and preprocessing
Code to reproduce the results of the paper 'Towards Realistic Few-Shot Relation Extraction' (EMNLP 2021)
Realistic Few-Shot Relation Extraction This repository contains code to reproduce the results in the paper "Towards Realistic Few-Shot Relation Extrac
A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.
meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av
Simple NLP based project without any use of AI
Simple NLP based project without any use of AI
WORD: Revisiting Organs Segmentation in the Whole Abdominal Region
WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or
NLP codes implemented with Pytorch (w/o library such as huggingface)
NLP_scratch NLP codes implemented with Pytorch (w/o library such as huggingface) scripts ├── models: Neural Network models ├── data: codes for dataloa
Tool which allow you to detect and translate text.
Text detection and recognition This repository contains tool which allow to detect region with text and translate it one by one. Description Two pretr
This is a text summarizing tool written in Python
Summarize Written by: Ling Li Ya This is a text summarizing tool written in Python. User Guide Some things to note: The application is accessible here
Measuring if attention is explanation with ROAR
NLP ROAR Interpretability Official code for: Evaluating the Faithfulness of Importance Measures in NLP by Recursively Masking Allegedly Important Toke
NLP Overview
NLP-Overview Introduction The field of NPL encompasses a variety of topics which involve the computational processing and understanding of human langu
An Open-Source Toolkit for Prompt-Learning.
An Open-Source Framework for Prompt-learning. Overview • Installation • How To Use • Docs • Paper • Citation • What's New? Nov 2021: Now we have relea
This library is testing the ethics of language models by using natural adversarial texts.
prompt2slip This library is testing the ethics of language models by using natural adversarial texts. This tool allows for short and simple code and v
Grading tools for Advanced NLP (11-711)Grading tools for Advanced NLP (11-711)
Grading tools for Advanced NLP (11-711) Installation You'll need docker and unzip to use this repo. For docker, visit the official guide to get starte
Spert NLP Relation Extraction API deployed with torchserve for inference
SpERT torchserve Spert_torchserve is the Relation Extraction model (SpERT)Span-based Entity and Relation Transformer API deployed with pytorch/serve.
Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation
DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning
Explainable Medical ImageSegmentation via GenerativeAdversarial Networks andLayer-wise Relevance Propagation
MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in
Bayesian Optimization Library for Medical Image Segmentation.
bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im