Python 3d-genome-visualization Resources

CanvasXpress Python Library About CanvasXpress for Python CanvasXpress was developed as the core visualization component for bioinformatics and system

Simple-Data-Visualization A simple project on Data Visualization for CSCI-40 course - the instructions can be found here SAT results in New York in 20

ecoglib: visualization and statistics for high density microecog signals This library contains high-level analysis tools for "topos" and "chronos" asp

Exploring aircraft accidents in Brazil Occurrencies with aircraft in Brazil are investigated by the Center for Investigation and Prevention of Aircraf

Rater Scoring Modeling Tool Introduction Automated scoring of written and spoken test responses is a growing field in educational natural language pro

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

This repository contains a number of convolutional neural network visualization techniques implemented in PyTorch.

LMdiff Qualitative comparison of large language models. Demo & Paper: http://lmdiff.net LMdiff is a MIT-IBM Watson AI Lab collaboration between: Hendr

MPL Plotter is a Matplotlib based Python plotting library built with the goal of delivering publication-quality plots concisely.

A lightweight and powerful python module for scientific analysis and visualization of 3d objects.

Visualization Data Drug in thailand during 2014 to 2020 Data sorce from ข้อมูลเปิดภาครัฐ สำนักงาน ป.ป.ส Inttroducing program Using tkinter module for

CBMPy Metadraft: a flexible and extensible, GUI-based genome-scale model reconstruction tool that supports multiple Systems Biology standards.

MINT (Metabolomics Integrator) The Metabolomics Integrator (MINT) is a post-processing tool for liquid chromatography-mass spectrometry (LCMS) based m

duality Data science, Data manipulation and Machine learning package. Use permitted according to the terms of use and conditions set by the attached l

Auto-ML tool specialized in detecting of outliers Description This tool will allows you, with a Dash visualization, to compare 10 models of machine le

Book on Julia for Data Science

dbv Decision Border Visualizer for Classification Algorithms Project description A python package for Machine Learning Engineers who want to visualize

PerfPlotter Read data from CSV files using pandas and generate interactive plots using bokeh, which can then be embedded into HTML pages and served by

Datenvisualisierung-Elektromagnetischen-Spektrum Anhand des Moduls matplotlib sollen die Daten des elektromagnetischen Spektrums dargestellt werden. D

CRISPR-detector Here we propose our CRISPR-detector to facilitate the CRISPR-edited amplicon and whole genome sequencing data analysis, with functions

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

EarthGAN - Earth Mantle Surrogate Modeling Can a surrogate model of the Earth’s Mantle Convection data set be built such that it can be readily run in

Data visualization using matplotlib project instructions Top 5 Most Common Coffee Origins In this visualization I used data from Ankur Chavda on Kaggl

Rick and Morty Data Visualization For this project I looked at data for the TV show Rick and Morty Number of Episodes at a Certain Location Here is th

Data Trump's Tweeted Words This plot illustrates twitter word occurences. We already did the coding I needed for this plot, so I was very inspired to

China and India Population and GDP Visualization Historical Population Comparison between India and China This graph shows the population data of Indi

geospatial-data-analysis [readme] Use this code in your Python IDE or notebook to generate a basic Kepler.gl data visualization, without pre-configura

Visualizing Technical Indicators Using Python and Plotly. Currently facing issues hosting the application on heroku. As soon as I am able to I'll like

libreMind Meditation exercises What is it? LibreMind is a free meditation app made in under 24 hours. It has various meditation, breathwork, and visua

3D detection and tracking viewer (visualization) for kitti & waymo dataset

Sorting-Visualizer This is a sorting visualizer made with Tkinter. Make sure you've installed tkinter in your system to use this visualizer pip instal

JittorVis: Visual understanding of deep learning model JittorVis is an open-source library for understanding the inner workings of Jittor models by vi

chitra What is chitra? chitra (चित्र) is a multi-functional library for full-stack Deep Learning. It simplifies Model Building, API development, and M

Simple-Classifier This is a basic example of how to use several different libraries for classification and ensembling, mostly with sklearn. Example as

QuakeLabeler Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently bu

What is Retentioneering? Retentioneering is a Python framework and library to assist product analysts and marketing analysts as it makes it easier to

seaborn-image: image data visualization Description Seaborn-image is a Python image visualization library based on matplotlib and provides a high-leve

Robotic Arm Simulation in ROS2 and Gazebo General Overview This repository includes: First, how to simulate a 6DoF Robotic Arm from scratch using GAZE

Missing Pixel Filler This is the official code repository for the Missing Pixel Filler by SpaceML. missing-pixel-filler is a python package that, give

QQuickSort A simple GUI visualization of QuickSort algorithm. It only uses PySide6, it does not have any other external dependency. How to run Install

PoseViz – 3D Human Pose Visualizer Multi-person, multi-camera 3D human pose visualization tool built using Mayavi. As used in MeTRAbs visualizations.

Glue Glue is a python project to link visualizations of scientific datasets across many files. Click on the image for a quick demo: Features Interacti

Economics Observatory Visualisation Repository Website | Visualisations | Data | Here you will find all the data visualisations and infographics attac

Sorting Algorithm Visualizer A gui application to visualize various sorting algorithms using pure python. Language : Python 3 Libraries required Tkint

HUMAN4D: A Human-Centric Multimodal Dataset for Motions & Immersive Media HUMAN4D constitutes a large and multimodal 4D dataset that contains a variet

A data visualization curriculum of interactive notebooks, using Vega-Lite and Altair. This repository contains a series of Python-based Jupyter notebooks.

Pathfinding-Visualizer 🚀 A visualization tool made in Pygame for various pathfinding algorithms. Pathfinding is closely related to the shortest path

Web Scrapping Popular Youtube Tech Channels with Selenium Data Mining, Data Wrangling, and Exploratory Data Analysis About the Data Web scrapi

HyperSpy is an open source Python library for the interactive analysis of multidimensional datasets that can be described as multidimensional arrays o

TRAnsformer Routing Networks (TRAR) This is an official implementation for ICCV 2021 paper "TRAR: Routing the Attention Spans in Transformers for Visu

A ultra-lightweight 3D renderer of the Tensorflow/Keras neural network architectures

Reporting and Visualization for Hazardous Events

GNNLens2 is an interactive visualization tool for graph neural networks (GNN).

Rover - Terraform Visualizer Rover is a Terraform visualizer. In order to do this, Rover: generates a plan file and parses the configuration in the ro

Dream-Creator This project aims to simplify the process of creating a custom DeepDream model by using pretrained GoogleNet models and custom image dat

FlashTorch A Python visualization toolkit, built with PyTorch, for neural networks in PyTorch. Neural networks are often described as "black box". The

neural-dream This is a PyTorch implementation of DeepDream. The code is based on neural-style-pt. Here we DeepDream a photograph of the Golden Gate Br

Convolutional Neural Network Visualizations This repository contains a number of convolutional neural network visualization techniques implemented in

Website, Tutorials, and Docs    Uncertainty Toolbox A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualizatio

SpecViewer A simple visualization tool for astronomers. Dependencies Python = 3.7.4 PyQt5 = 5.15.4 pyqtgraph == 0.10.0 numpy = 1.19.4 How to use py

Structured Self-attentive sentence embeddings Implementation for the paper A Structured Self-Attentive Sentence Embedding, which was published in ICLR

VIN: Value Iteration Networks This is an implementation of Value Iteration Networks (VIN) in PyTorch to reproduce the results.(TensorFlow version) Key

NeRF visualization library using PlenOctrees, under construction pip install nerfvis Docs will be at: https://nerfvis.readthedocs.org import nerfvis s

Point Cloud ToolBox This point cloud processing tool library can be used to process point clouds, 3d meshes, and voxels. Environment python 3.7.5 Dep

Python Mini Projects A collection of easy Python small projects to help you improve your programming skills. Table Of Contents Aim Of The Project Cont

DecisionTree 决策树分类与回归模型，以及可视化 DecisionTree ID3 C4.5 CART 分类 回归 决策树绘制 分类树 回归树 调参 剪枝 ID3 ID3决策树是最朴素的决策树分类器： 无剪枝 只支持离散属性 采用信息增益准则 在data.py中，我们记录了一个小的西瓜数据

Twitter-Map This software allows the user to create maps of Twitter accounts. Installation git clone [email protected]:OGreenwood672/Twitter-Map.git cd T

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

PyTorch implementation of Interpretable Explanations of Black Boxes by Meaningful Perturbation The paper: https://arxiv.org/abs/1704.03296 What makes

Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown

MoVi-Toolbox Data Preparation, Processing, and Visualization for MoVi Data, https://www.biomotionlab.ca/movi/ MoVi is a large multipurpose dataset of

Neural network visualization toolkit for tf.keras

Structured Self-attentive sentence embeddings Implementation for the paper A Structured Self-Attentive Sentence Embedding, which was published in ICLR

attractors Attractors is a package for simulation and visualization of strange attractors. Installation The simplest way to install the module is via

Transparency-by-Design networks (TbD-nets) This repository contains code for replicating the experiments and visualizations from the paper Transparenc

Integrated Gradients This is the pytorch implementation of "Axiomatic Attribution for Deep Networks". The original tensorflow version could be found h

About DRIFT is a tool for Diachronic Analysis of Scientific Literature. The application offers user-friendly and customizable utilities for two modes:

A Python library for reading, writing and visualizing the OMEGA Format, targeted towards storing reference and perception data in the automotive context on an object list basis with a focus on an urban use case.

Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data, as well as tissue images if available.

All-in-one web-based development environment for machine learning Getting Started • Features & Screenshots • Support • Report a Bug • FAQ • Known Issu

Learning Canonical Representations for Scene Graph to Image Generation (ECCV 2020) Roei Herzig*, Amir Bar*, Huijuan Xu, Gal Chechik, Trevor Darrell, A

streamlit-tensorboard This is a work-in-progress, providing a function to embed TensorBoard, TensorFlow's visualization toolkit, in Streamlit apps. In

Temporal network visualization This code is what I used to make the visualizations of SocioPatterns' primary school data here It requires the data of

JittorVis - Visual understanding of deep learning model.

RLCard Showdown This is the GUI support for the RLCard project and DouZero project. RLCard-Showdown provides evaluation and visualization tools to hel

HUMAP Hierarchical Manifold Approximation and Projection (HUMAP) is a technique based on UMAP for hierarchical non-linear dimensionality reduction. HU

rust-mdbg: Minimizer-space de Bruijn graphs (mdBG) for whole-genome assembly rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) impleme

Statistics and Visualization of acceptance rate, main keyword of CVPR 2021 accepted papers for the main Computer Vision conference (CVPR)

LinkedIn Connections Analyzer 🔗 https://linkedin-analzyer.herokuapp.com Hey hey 👋 , welcome to my LinkedIn connections analyzer. I recently found ou

streamlit-letsplot This is a work-in-progress, providing a convenience function to plot charts from the Lets-Plot visualization library. Example usage

Blockchain ✨ Learn Blockchains by Building One Yourself Installation Make sure Python 3.6+ is installed. Install Flask Web Framework. Clone this repos

Visualizing Adapted Knowledge in Domain Transfer @inproceedings{hou2021visualizing, title={Visualizing Adapted Knowledge in Domain Transfer}, auth

Plot, scatter plots and histograms in the terminal using braille dots, with (almost) no dependancies. Plot with color or make complex figures - similar to a very small sibling to matplotlib. Or use the canvas to plot dots and lines yourself.

notebookJS enables the execution of custom JavaScript code in Python Notebooks (Jupyter Notebook and Google Colab). This Python library can be useful for implementing and reusing interactive Data Visualizations in the Notebook environment.

DexYCB Toolkit DexYCB Toolkit is a Python package that provides evaluation and visualization tools for the DexYCB dataset. The dataset and results wer

Sequence-to-sequence framework with a focus on Neural Machine Translation based on Apache MXNet

SummVis is an interactive visualization tool for analyzing abstractive summarization model outputs and datasets.

Visualization Toolbox for Long Short Term Memory networks (LSTMs)

sankee Visualize changes in classified time series data with interactive Sankey plots in Google Earth Engine Contents Description Installation Using P