Python Graph-similarity Resources

GraPE GraPE (Graph Processing and Embedding) is a fast graph processing and embedding library, designed to scale with big graphs and to run on both of

Variational Graph Auto-encoder in Pytorch This repository implements variational graph auto-encoder by Thomas Kipf. For details of the model, refer to

This is a repository for the paper of "Well-classified Examples are Underestimated in Classification with Deep Neural Networks" The implementation and

SSSNET SSSNET: Semi-Supervised Signed Network Clustering For details, please read our paper. Environment Setup Overview The project has been tested on

Motif-based Graph Self-Supervised Learning for Molecular Property Prediction Official Pytorch implementation of NeurIPS'21 paper "Motif-based Graph Se

Corp-Rel is a PoC of Corpartion Relationship Knowledge Graph System. It's built on top of the Open Source Graph Database: Nebula Graph with a dataset

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

Multi-modal Interaction Graph Convolutioal Network for Temporal Language Localization in Videos Official implementation for Multi-Modal Interaction Gr

Adversarial text generator Refer to "adversarial_text_generator"[https://github.com/quocnsh/SEPP_generator] project for generating adversarial texts A

MMSceneGraph Introduction MMSceneneGraph is an open source code hub for scene graph generation as well as supporting downstream tasks based on the sce

3D Infomax improves GNNs for Molecular Property Prediction Video | Paper We pre-train GNNs to understand the geometry of molecules given only their 2D

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

AASIST This repository provides the overall framework for training and evaluating audio anti-spoofing systems proposed in 'AASIST: Audio Anti-Spoofing

DSIG Deep Structured Instance Graph for Distilling Object Detectors Authors: Yixin Chen, Pengguang Chen, Shu Liu, Liwei Wang, Jiaya Jia. [pdf] [slide]

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

Permute Me Softly: Learning Soft Permutations for Graph Representations

Relation Prediction as an Auxiliary Training Objective for Knowledge Base Completion This repo provides the code for the paper Relation Prediction as

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A framework for evaluating Knowledge Graph Embedding Models in a fine-grained manner.

GNNLens2 is an interactive visualization tool for graph neural networks (GNN).

SimTrans-Weak-Shot-Classification This repository contains the official PyTorch implementation of the following paper: Weak-shot Fine-grained Classifi

DGCNN is the author's re-implementation of Dynamic Graph CNN, which achieves state-of-the-art performance on point-cloud-related high-level tasks including category classification, semantic segmentation and part segmentation.

Official implementation of NeurIPS 2021 paper "One Loss for All: Deep Hashing with a Single Cosine Similarity based Learning Objective"

IGMTF The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting". Requirements The framework

GLaRA: Graph-based Labeling Rule Augmentation for Weakly Supervised Named Entity Recognition

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

Graphlevel-SSL Overview Apply Graph Self-Supervised Learning methods to graph-level task(TUDataset, MolculeNet Dataset). It is unified framework to co

Dynamic Attentive Graph Learning for Image Restoration This repository is for GATIR introduced in the following paper: Chong Mou, Jian Zhang, Zhuoyuan

SE Aggregation This is the implementation for Rethinking High-order Graph Convolutional Networks. Here we show the codes for citation networks as an e

AAGCN-ACSA EMNLP 2021 Introduction This repository was used in our paper: Beta Distribution Guided Aspect-aware Graph for Aspect Category Sentiment An

Pyan takes one or more Python source files, performs a (rather superficial) static analysis, and constructs a directed graph of the objects in the combined source, and how they define or use each other. The graph can be output for rendering by GraphViz or yEd.

DeepPanoContext (DPC) [Project Page (with interactive results)][Paper] DeepPanoContext: Panoramic 3D Scene Understanding with Holistic Scene Context G

TensorFlow Similarity is a python package focused on making similarity learning quick and easy.

This is an open-source toolkit for Heterogeneous Graph Neural Network(OpenHGNN) based on DGL [Deep Graph Library] and PyTorch.

CTR-GCN This repo is the official implementation for Channel-wise Topology Refinement Graph Convolution for Skeleton-Based Action Recognition. The pap

MVGCN MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks. Developer: Fu Hait

Adaptive Graph Convolution for Point Cloud Analysis This repository contains the implementation of AdaptConv for point cloud analysis. Adaptive Graph

Graph2Pix: A Graph-Based Image to Image Translation Framework Installation Install the dependencies in env.yml $ conda env create -f env.yml $ conda a

Single Node Injection Attack against Graph Neural Networks This repository is our Pytorch implementation of our paper: Single Node Injection Attack ag

ANEMONE A PyTorch implementation of "ANEMONE: Graph Anomaly Detection with Multi-Scale Contrastive Learning", CIKM-21 Dependencies python==3.6.1 dgl==

近年来，图计算在搜索、推荐和风控等场景中获得显著的效果，但也面临超大规模异构图训练，与现有的深度学习框架Tensorflow和PyTorch结合等难题。 Galileo（伽利略）是一个图深度学习框架，具备超大规模、易使用、易扩展、高性能、双后端等优点，旨在解决超大规模图算法在工业级场景的落地难题，提

PAUSE: Positive and Annealed Unlabeled Sentence Embedding Sentence embedding refers to a set of effective and versatile techniques for converting raw

txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications.

✨A Python framework to explore, label, and monitor data for NLP projects

ZSL-KG is a general-purpose zero-shot learning framework with a novel transformer graph convolutional network (TrGCN) to learn class representa

GraphKer Open Source Tool - Cybersecurity Graph Database in Neo4j |G|r|a|p|h|K|e|r| { open source tool for a cybersecurity graph database in neo4j } W

COTREC Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'. Requirements: Python 3.7, Pytorch 1.6.0 Best Hype

MWPToolkit is a PyTorch-based toolkit for Math Word Problem (MWP) solving. It is a comprehensive framework for research purpose that integrates popular MWP benchmark datasets and typical deep learning-based MWP algorithms.

Poplar Implementation of Bundle Adjustment using Gaussian Belief Propagation on Graphcore's IPU Implementation of CVPR 2020 paper: Bundle Adjustment o

SGLKT-VisDial Pytorch Implementation for the paper: Reasoning Visual Dialog with Sparse Graph Learning and Knowledge Transfer Gi-Cheon Kang, Junseok P

TOPSIS implementation in Python Technique for Order of Preference by Similarity to Ideal Solution (TOPSIS) CHING-LAI Hwang and Yoon introduced TOPSIS

GraphGT: Machine Learning Datasets for Graph Generation and Transformation Dataset Website | Paper Installation Using pip To install the core environm

Differentiable Factor Graph Optimization for Learning Smoothers Overview Status Setup Datasets Training Evaluation Acknowledgements Overview Code rele

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Bag of Tricks for Training Deeper Graph Neural Networks: A Comprehensive Benchmark Study Codes for [Preprint] Bag of Tricks for Training Deeper Graph

Filtration Curves for Graph Representation This repository provides the code from the KDD'21 paper Filtration Curves for Graph Representation. Depende

MERIT A PyTorch implementation of our IJCAI-21 paper Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learning. Depen

Graph-Based Local Trajectory Planner The graph-based local trajectory planner is python-based and comes with open interfaces as well as debug, visuali

SpiderFoot Neo4j Tools Import, visualize, and analyze SpiderFoot OSINT data in Neo4j, a graph database Step 1: Installation NOTE: This installs the sf

KoSimCSE Korean Simple Contrastive Learning of Sentence Embeddings implementation using pytorch SimCSE Installation git clone https://github.com/BM-K/

SIGIR2021-EGLN The implement of paper "Enhanced Graph Learning for Collaborative Filtering via Mutual Information Maximization" Neural graph based Col

Torch-RGCN Torch-RGCN is a PyTorch implementation of the RGCN, originally proposed by Schlichtkrull et al. in Modeling Relational Data with Graph Conv

README.md shall be finished soon. WSSGG 0 Overview 1 Installation 1.1 Faster-RCNN 1.2 Language Parser 1.3 GloVe Embeddings 2 Settings 2.1 VG-GT-Graph

Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting Official PyTorch implementation of the paper: Improving Graph Neural Net

Graph ConvNets in PyTorch October 15, 2017 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbresson

Graph Convolutional Networks in PyTorch PyTorch implementation of Graph Convolutional Networks (GCNs) for semi-supervised classification [1]. For a hi

PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for

Graph Convolutional Networks for Hyperspectral Image Classification Danfeng Hong, Lianru Gao, Jing Yao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot T

Heterogeneous Graph Benchmark Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks. Roadmap We organize our repo by task, and on

Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl

A powerful and flexible machine learning platform for drug discovery

CG-MuAlign A reference implementation for "Collective Multi-type Entity Alignment Between Knowledge Graphs", published in WWW 2020. If you find our pa

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.

PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL components from published papers, standardized evaluation, and experiment management.

中文开放信息抽取系统, open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)

PyGCL: Graph Contrastive Learning for PyTorch PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL com

ISL This is the official pytorch implementation for the paper: Instance Similarity Learning for Unsupervised Feature Representation, which is accepted

HKD Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks" cifia-100 result The implementation of compared methods are ba

A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

emoji-math computes the given python expression and returns either the value or the nearest 5 emojis as measured by cosine similarity.

GNN4Traffic - This is the repository for the collection of Graph Neural Network for Traffic Forecasting

RapidFuzz is a fast string matching library for Python and C++, which is using the string similarity calculations from FuzzyWuzzy

TilinGNN: Learning to Tile with Self-Supervised Graph Neural Network (SIGGRAPH 2020) About The goal of our research problem is illustrated below: give

Open-source tool for exploring, labeling, and monitoring data for AI projects

Graph Wavelet Neural Network ⠀⠀ A PyTorch implementation of Graph Wavelet Neural Network (ICLR 2019). Abstract We present graph wavelet neural network

Attention Walk ⠀⠀ A PyTorch Implementation of Watch Your Step: Learning Node Embeddings via Graph Attention (NIPS 2018). Abstract Graph embedding meth

SGCN ⠀ A PyTorch implementation of Signed Graph Convolutional Network (ICDM 2018). Abstract Due to the fact much of today's data can be represented as

Scalable Incomplete Network Embedding ⠀⠀ A PyTorch implementation of Scalable Incomplete Network Embedding (ICDM 2018). Abstract Attributed network em

GAM ⠀⠀ A PyTorch implementation of Graph Classification Using Structural Attention (KDD 2018). Abstract Graph classification is a problem with practic

TuckER: Tensor Factorization for Knowledge Graph Completion This codebase contains PyTorch implementation of the paper: TuckER: Tensor Factorization f

SimGNN ⠀⠀⠀ A PyTorch implementation of SimGNN: A Neural Network Approach to Fast Graph Similarity Computation (WSDM 2019). Abstract Graph similarity s

APPNP ⠀ A PyTorch implementation of Predict then Propagate: Graph Neural Networks meet Personalized PageRank (ICLR 2019). Abstract Neural message pass

MixHop and N-GCN ⠀ A PyTorch implementation of "MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing" (ICML 2019)

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

CapsGNN ⠀⠀ A PyTorch implementation of Capsule Graph Neural Network (ICLR 2019). Abstract The high-quality node embeddings learned from the Graph Neur

SEAL ⠀⠀⠀ A PyTorch implementation of Semi-Supervised Graph Classification: A Hierarchical Graph Perspective (WWW 2019) Abstract Node classification an

ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A