Python Graph-to-tree Resources

DEEP LEARNING FOR CODERS WITH FASTAI AND PYTORCH The repository contains a list of the projects which I have worked on while reading the book Deep Lea

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

Computational Xmas Tree This repo contains the code for the computational illumination of a Christmas Tree! It is based on the work by Matt Parker fro

Python Decision Tree and Random Forest Decision Tree A Decision Tree is one of the popular and powerful machine learning algorithms that I have learne

DeltaConv [Paper] [Project page] Code for the SIGGRAPH 2022 paper "DeltaConv: Anisotropic Operators for Geometric Deep Learning on Point Clouds" by Ru

Multi-Graph Fusion Networks for Urban Region Embedding (IJCAI-22) This is the implementation of Multi-Graph Fusion Networks for Urban Region Embedding

Drug Interaction Prediction with Tigerlily Documentation | Example Notebook | Youtube Video | Project Report Tigerlily is a TigerGraph based system de

Structured Sparse R-CNN for Direct Scene Graph Generation Our paper Structured Sparse R-CNN for Direct Scene Graph Generation has been accepted by CVP

PrimeKG Website | bioRxiv Paper | Harvard Dataverse Precision Medicine Knowledge Graph (PrimeKG) presents a holistic view of diseases. PrimeKG integra

Graph Stochastic Attention (GSAT) The official implementation of GSAT for our paper: Interpretable and Generalizable Graph Learning via Stochastic Att

skillmap A tool for generating skill map/tree like diagram. What is a skill map/tree? Skill tree is a term used in video games, and it can be used for

SignLangGNN When GNNs 💜 MediaPipe. This is a starter project where I tried to implement some traditional image classification problem i.e. the ASL si

GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome

CAKE ACL 2022: CAKE: A Scalable Commonsense-Aware Framework For Multi-View Knowledge Graph Completion Introduction This is the PyTorch implementation

PyGOD is a Python library for graph outlier detection (anomaly detection). This exciting yet challenging field has many key applications, e.g., detect

PyGCL is a PyTorch-based open-source Graph Contrastive Learning (GCL) library, which features modularized GCL components from published papers, standa

FastTreeSHAP FastTreeSHAP package is built based on the paper Fast TreeSHAP: Accelerating SHAP Value Computation for Trees published in NeurIPS 2021 X

AMRBART An implementation for ACL2022 paper "Graph Pre-training for AMR Parsing and Generation". You may find our paper here (Arxiv). Requirements pyt

MKGFormer Code for the SIGIR 2022 paper "Hybrid Transformer with Multi-level Fusion for Multimodal Knowledge Graph Completion" Model Architecture Illu

DeepGNN Overview DeepGNN is a framework for training machine learning models on large scale graph data. DeepGNN contains all the necessary features in

Intention Adaptive Graph Neural Network (IAGNN) This is the official repository of paper Intention Adaptive Graph Neural Network for Category-Aware Se

Twingrind This project brings profiling to TwinCAT PLCs. The general idea of the implementation is as follows. Twingrind is a TwinCAT library that inc

Diversifying Commonsense Reasoning Generation on Knowledge Graph Introduction -- This is the pytorch implementation of our ACL 2022 paper "Diversifyin

SDM - Lab 1 @ UPC 👨🏻‍💻 Table of contents Introduction Property Graph Dataset 1. Introduction This repo is all about what we have done in SDM lab 1

On Size-Oriented Long-Tailed Graph Classification of Graph Neural Networks We provide the code (in PyTorch) and datasets for our paper "On Size-Orient

GBIF-biodiverse-OpenTree Linking data between GBIF, Biodiverse, and Open Tree of Life The python scripts will rely on opentree and Dendropy. To set up

Multi-view graph embedding clustering network: Joint self-supervision and block diagonal representation Simple implementation of our paper MVGC. The d

Commit Bot Automatically generate GitHub activity! We've all wanted to be the developer that commits every day, but that requires a lot of work. Let's

SGMC: Spectral Graph Matrix Completion Code for AAAI21 paper "Scalable and Explainable 1-Bit Matrix Completion via Graph Signal Learning". Data Format

GraphLily: A Graph Linear Algebra Overlay on HBM-Equipped FPGAs GraphLily is the first FPGA overlay for graph processing. GraphLily supports a rich se

Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, RDFlib, pySHACL, RAPIDS, NetworkX, iGraph, PyVis, pslpython, pyarrow, etc.

TGIN Tensorflow implementation of our method: "Triangle Graph Interest Network for Click-through Rate Prediction". Files in the folder dataset/ electr

MarkovGNN This is the official PyTorch-Geometric implementation of MarkovGNN paper under the title "MarkovGNN: Graph Neural Networks on Markov Diffusi

TorchMD-net TorchMD-Net provides state-of-the-art graph neural networks and equivariant transformer neural networks potentials for learning molecular

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Code for CCA-SSG model proposed in the NeurIPS 2021 paper From Canonical Correlation Analysis to Self-supervised Graph Neural Networks.

The project has set itself the goal of analyzing the thoughts and interaction of Italian users through the social posts expressed through the Twitter platform on the day of the entry into force of the new measures. In particular, we want to research the reference hubs present on the network, but also the sentiment and emotions of peoples with respect to the new limitations.

Python red-black trees A Python implementation of red-black trees. This code was originally copied from programiz.com, but I have made a few tweaks to

Large-scale Knowledge Graph Construction with Prompting across tasks (predictive and generative), and modalities (language, image, vision + language, etc.)

FIRA is a learning-based commit message generation approach, which first represents code changes via fine-grained graphs and then learns to generate commit messages automatically.

BoxPlotGraphAutomation Automatization of BoxPlot graph usin Python / Excel. This file is an automation of BoxPlot-Graph using python graph library mat

A Graph Learning library for Humans These novel algorithms include but are not limited to: A graph construction and graph searching class can be found

HAIS_2GNN: 3D Visual Grounding with Graph and Attention This repository is for the HAIS_2GNN research project. Tao Gu, Yue Chen Introduction The motiv

A tool to get a minimalist view of any architecture This tool has only be tested with the models included in this repo. Therefore, I can't guarantee t

This is the repository for codes for ML, domain generation, graph generation of Asymmetric Buckling Columns (ABC) dataset in the paper "Learning Mechanically Driven Emergent Behavior with Message Passing Neural Networks".

Graph Coloring - Weighted Vertex Coloring Problem This project proposes several local searches and an MCTS algorithm for the weighted vertex coloring

Python package for concise, transparent, and accurate predictive modeling. All sklearn-compatible and easy to use. 📚 docs • 📖 demo notebooks Modern

Code Impementation for "Mold into a Graph: Efficient Bayesian Optimization over Mixed Spaces" This repo contains the implementation of GEBO algorithm.

Graph Convolution Simulator (GCS) Source code for "Understanding Knowledge Integration in Language Models with Graph Convolutions" Requirements: PyTor

Python-AmongUsProblem Project in which we modelise an Among Us problem using graph theories. The rules are as following: Total of 100 players 10 playe

TGraM Multi-Object Tracking in Satellite Videos with Graph-Based Multi-Task Modeling, Qibin He, Xian Sun, Zhiyuan Yan, Beibei Li, Kun Fu Abstract Rece

Expense Tracker is a very good tool to keep track of your expenseditures and the total money you saved.

LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

Iterative refinement graph neural network for antibody sequence-structure co-des

GraphNLI: A Graph-based Natural Language Inference Model for Polarity Prediction in Online Debates Vibhor Agarwal, Sagar Joglekar, Anthony P. Young an

Equivariant Subgraph Aggregation Networks (ESAN) This repository contains the official code of the paper Equivariant Subgraph Aggregation Networks (IC

Hatchet Hatchet is a Python-based library that allows Pandas dataframes to be indexed by structured tree and graph data. It is intended for analyzing

scrapy-folder-tree This is a scrapy pipeline that provides an easy way to store files and images using various folder structures. Supported folder str

DIR-GNN "Discovering Invariant Rationales for Graph Neural Networks" (ICLR 2022)

Live Demo (currently not running, on it) Espial is an engine for automated organization and discovery in knowledge bases. It can be adapted to run wit

TorchGRL TorchGRL is the source code for our paper Graph Convolution-Based Deep Reinforcement Learning for Multi-Agent Decision-Making in Mixed Traffi

GNN_PPI Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction". Lear

machine-learning-with-graphs My solutions for Stanford University course CS224W: Machine Learning with Graphs Fall 2021 colabs Course materials can be

README This code implements constituency parse tree aggregation. Folder details code: This folder contains the code that implements constituency parse

GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration Stefan Abi-Karam*, Yuqi He*, Rishov Sarkar*, Lakshmi Sathidevi, Zihang Qiao, Co

OntoProtein This is the implement of the paper "OntoProtein: Protein Pretraining With Ontology Embedding". OntoProtein is an effective method that mak

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

GNDC For submission to IEEE TKDE. Overview Here we provide the implementation of GND-Nets (Graph Neural Diffusion Networks) in TensorFlow. The reposit

Author Name Disambiguation with Knowledge Graph Embeddings using Literals This is the repository for the master thesis project on Knowledge Graph Embe

GreaseLM: Graph REASoning Enhanced Language Models This repo provides the source code & data of our paper "GreaseLM: Graph REASoning Enhanced Language

TGRNet: A Table Graph Reconstruction Network for Table Structure Recognition Xue, Wenyuan, et al. "TGRNet: A Table Graph Reconstruction Network for Ta

STAR_KGC This repo contains the source code of the paper accepted by WWW'2021. "Structure-Augmented Text Representation Learning for Efficient Knowled

CSKG: The CommonSense Knowledge Graph CSKG is a commonsense knowledge graph that combines seven popular sources into a consolidated representation: AT

Graph Analysis From Scratch Goal In this notebook we wanted to implement some functionalities to analyze a weighted graph only by using algorithms imp

Roam to Logseq The script loads a json export of a Roam graph and cleans it up f

bspcq, q for query A bspc analyzer (utility for bspwm) This is a small program that prints a user friendly, visual representation, of your current bsp

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

Diabetes Prediction Using Decision Tree Introduction Decision tree is the most powerful and popular tool for classification and prediction. A Decision

GPU implementation of kNN and SNN GPU implementation of $k$-Nearest Neighbors and Shared-Nearest Neighbors Supported by numba cuda and faiss library E

TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the computational graph.

DI-treetensor treetensor is a generalized tree-based tensor structure mainly developed by OpenDILab Contributors. Almost all the operation can be supp

ECLARE ECLARE: Extreme Classification with Label Graph Correlations @InProceedings{Mittal21b, author = "Mittal, A. and Sachdeva, N. and Agrawal

GalaXC GalaXC: Graph Neural Networks with Labelwise Attention for Extreme Classification @InProceedings{Saini21, author = {Saini, D. and Jain,

implementation of machine learning Algorithms such as decision tree and random forest and xgboost on darasets then compare results for each and implement ant colony and genetic algorithms on tsp map, play blackjack game and robot in grid world and evaluate reward for it

必要なソフト・パッケージ Python3 Numpy JSON Matplotlib 動作確認環境 MacBook Air M1 Python 3.8.2 (arm64) Numpy 1.22.0 Matplotlib 3.5.1 JSON 2.0.9 使い方 draw_time_histgram(

ML_Model_implementaion Implementation of ML models like Decision tree, Naive Bayes, Logistic Regression and many other dectree_model: Implementation o

GraphMLTutorialNLDL22 Tutorial NLDL22: Introduction to Graph Machine Learning, with Jupyter notebooks This tutorial takes place during the conference

Scene Graph Generation from Natural Language Supervision This repository includes the Pytorch code for our paper "Learning to Generate Scene Graph fro

LA-MCTS The code is based of paper Learning Search Space Partition for Black-box Optimization using Monte Carlo Tree Search. Component LA-MCTS has thr

Pytorch Implementation of Learning Mesh-based Simulation With Graph Networks This is the unofficial implementation of the approach described in the pa

Node-level Graph Regression with Deep Gaussian Process Models Prerequests our implementation is mainly based on tensorflow 1.x and gpflow 1.x: python

FairEdit Relevent Publication FairEdit: Preserving Fairness in Graph Neural Networks through Greedy Graph Editing

TBSG: Tree-based Search Graph for Approximate Nearest Neighbor Search. TBSG is a graph-based algorithm for ANNS based on Cover Tree, which is also an

DeepKE is a knowledge extraction toolkit supporting low-resource and document-level scenarios for entity, relation and attribute extraction. We provide comprehensive documents, Google Colab tutorials, and online demo for beginners.

1 MAGNN This repo is the official implementation for Multi-Scale Adaptive Graph Neural Network for Multivariate Time Series Forecasting. 1.1 The frame

VisionKG: Vision Knowledge Graph Official Repository of VisionKG by Anh Le-Tuan, Trung-Kien Tran, Manh Nguyen-Duc, Jicheng Yuan, Manfred Hauswirth and

PPGNet: Learning Point-Pair Graph for Line Segment Detection PyTorch implementation of our CVPR 2019 paper: PPGNet: Learning Point-Pair Graph for Line

Dynamic Stock Industrial Classification Use graph-based analysis to re-classify stocks and experiment different re-classification methodologies to imp

Dagon - An Asynchronous Task Graph Execution Engine Dagon is a job execution sys

Simple implementation of Equivariant GNN A short implementation of E(n) Equivariant Graph Neural Networks for HOMO energy prediction. Just 50 lines of