Python Medical-question-answering Resources

Disclaimer This code is provided for research and development use only. This code is not intended for use in clinical decision-making or for any other

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

Causality-inspired Single-source Domain Generalization for Medical Image Segmentation Arxiv preprint Repository under construction. Might still be bug

MedMCQA MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answering A large-scale, Multiple-Choice Question Answe

Paper | Blog OFA is a unified multimodal pretrained model that unifies modalities (i.e., cross-modality, vision, language) and tasks (e.g., image gene

In recent years, the dense retrievers based on pre-trained language models have achieved remarkable progress. To facilitate more developers using cutt

medical by LAION This repository will be a summary and outlook on all our open, medical, AI advancements. See the medical-general channel in the medic

🦩 Flamingo - Pytorch Implementation of Flamingo, state-of-the-art few-shot visual question answering attention net, in Pytorch. It will include the p

Weakly Supervised Text-to-SQL Parsing through Question Decomposition The official repository for the paper "Weakly Supervised Text-to-SQL Parsing thro

Project: Text Analysis - This project aims to conduct a text information retrieval and text mining on medical research publication regarding Covid19 -

On-the-Fly Adaptation Official Pytorch Code base for On-the-Fly Test-time Adaptation for Medical Image Segmentation Paper Introduction One major probl

ZEROGEN This repository contains the code for our paper “ZeroGen: Efficient Zero

Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation. Generally, MAS methods register multiple atlases, i.e., medical images with corresponding labels, to a target image;

A small python package that allows the user to look up common medical abbreviations.

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation By Qing Xu, Wenting Duan and Na He Requirements pytorch==1.1

Posterior temperature optimized Bayesian models for inverse problems in medical imaging Max-Heinrich Laves*, Malte Tölle*, Alexander Schlaefer, Sandy

JaQuAD: Japanese Question Answering Dataset for Machine Reading Comprehension (2022, Skelter Labs)

Setup virtualenv venv source venv/bin/activate pip install -r requirements.txt

BLIP: Bootstrapping Language-Image Pre-training for Unified Vision-Language Understanding and Generation

Medical natural language parsing and utility library A natural language medical

1st place solution in CCF BDCI 2021 ULSEG challenge This is the source code of the 1st place solution for ultrasound image angioma segmentation task (

Ditch the Gold Standard: Re-evaluating Conversational Question Answering This is the repository for our paper Ditch the Gold Standard: Re-evaluating C

Medical-Insurance-Project-OOP Python Classes: Medical Insurance Project using Object Oriented Programming Concepts Classes are an incredibly useful pr

Expert Finding in Legal Community Question Answering Arian Askari, Suzan Verberne, and Gabriella Pasi. Expert Finding in Legal Community Question Answ

Tracking Progress in Question Answering over Knowledge Graphs Table of contents Question Answering Systems with Descriptions The QA Systems Table cont

SegTransVAE: Hybrid CNN - Transformer with Regularization for medical image segmentation This repo is the official implementation for SegTransVAE. Seg

Leaf: Multiple-Choice Question Generation Easy to use and understand multiple-choice question generation algorithm using T5 Transformers. The applicat

miseval: a metric library for Medical Image Segmentation EVALuation The open-source and free to use Python package miseval was developed to establish

An Analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks Novel and high-performance medical ima

GreaseLM: Graph REASoning Enhanced Language Models This repo provides the source code & data of our paper "GreaseLM: Graph REASoning Enhanced Language

Toward Model Interpretability in Medical NLP LING380: Topics in Computational Linguistics Final Project James Cross ([email protected]) and Daniel Kim

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Introduction: X-Ray Report Generation This repository is for our EMNLP 2021 paper "Automated Generation of Accurate & Fluent Medical X-ray Reports". O

RATCHET: RAdiological Text Captioning for Human Examined Thoraxes RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting. Based on t

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

LeViT_UNet For medical image segmentation Our model is based on LeViT (https://github.com/facebookresearch/LeViT). You'd better gitclone its codes. Th

TransFuse This repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Requirements Pytorch=1.6.0, 1.9.0 (=1.

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Medical Data for Machine Learning This is a curated list of medical data for machine learning. This list is provided for informational purposes only,

HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images Histological Image Segmentation This

SI_EXPLAINER_tg_bot This bot is an assistant for medical professionals in interpreting the results of patient clustering. ABOUT This chatbot was devel

VIOLET: End-to-End Video-Language Transformers with Masked Visual-token Modeling A PyTorch implementation of VIOLET Overview VIOLET is an implementati

MedViLL This repository provides the code for MedViLL(Medical Vision Language Learner). Our proposed architecture MedViLL is a single BERT-based model

UnifiedSKG 📚 : Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Models Code for paper UnifiedSKG: Unifying and Mu

NLP PubMed Medical Research Paper Abstract (Randomized Controlled Trial) A natural language processing model for sequential sentence classification in

IPL-data-analysis This project consists of data analysis and data visualization of all IPL seasons from 2008 to 2019 and answering the most asked ques

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Introduction This repository contains the PyTorch implem

About Quiz Game : The Game is about answering questions naturally with a friendl

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

Introduction This is an implementation of our paper Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis.

Repository for papers: Benchmark: Effect of Prior-based Losses on Segmentation Performance: A Benchmark Midl: A Surprisingly Effective Perimeter-based

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

Medical Appointments No-shows Why do 20% of patients miss their scheduled appointments? A person makes a doctor appointment, receives all the instruct

Code and Experiments for ACL-IJCNLP 2021 Paper Mind Your Outliers! Investigating the Negative Impact of Outliers on Active Learning for Visual Question Answering.

Chinese Medical Entity Recognition Based on BERT+Bi-LSTM+CRF Step 1 I share the dataset on my google drive, please download the whole 'CCKS_2019_Task1

bottom-up-attention This code implements a bottom-up attention model, based on multi-gpu training of Faster R-CNN with ResNet-101, using object and at

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

30DaysOfCode-PhoenixClub 👨‍💻 Every day problems solution given in 30DaysOfCode

quora-plus-bypass A python script to extract answers to any question on Quora (Quora+ included) Requirements Python 3.x

Medical-Insurance-Cost-Prediction-using-Machine-learning - Here in this project, I will use regression analysis to predict medical insurance cost for people in different regions, and based on several aspects like : Smoking, Number of children, BMI...etc.

ALPRO Align and Prompt: Video-and-Language Pre-training with Entity Prompts [Paper] Dongxu Li, Junnan Li, Hongdong Li, Juan Carlos Niebles, Steven C.H

Multi-Image vqa @authors: Akhilesh, Janhavi, Harsh Paper summary, Ideas tried and their corresponding results: on wiki Other discussions: on discussio

Contrastive learning of global and local features for medical image segmentation with limited annotations The code is for the article "Contrastive lea

Medical-Image-Triage-and-Classification-System-Based-on-COVID-19-CT-and-X-ray-Sc

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

FFA-IR The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark." The framework is inheri

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

MISSFormer Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_add

QuALITY: Question Answering with Long Input Texts, Yes! Authors: Richard Yuanzhe Pang,* Alicia Parrish,* Nitish Joshi,* Nikita Nangia, Jason Phang, An

CPPE - 5 CPPE - 5 (Medical Personal Protective Equipment) is a new challenging dataset with the goal to allow the study of subordinate categorization

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

BERT-based Financial Question Answering System In this example, we use Jina, PyTorch, and Hugging Face transformers to build a production-ready BERT-b

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

How useful is the aswer? A Streamlit web-app for a data-science project that aims to evaluate if the answer to a question is helpful. If you want to l

Splinter This repository contains the code, models and datasets discussed in our paper "Few-Shot Question Answering by Pretraining Span Selection", to

Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels The implementation of Hypernet-Ensemble Le

contactsQA Extraction of contact entities from address blocks and imprints with Extractive Question Answering. Goal Input: Dr. Max Mustermann Hauptstr

Simple pipeline for experimenting with radiomics features Installation git clone https://github.com/piotrekwoznicki/ClassyRadiomics.git cd classrad pi

rapidnlp-datasets Data pipelines for both TensorFlow and PyTorch ! If you want to load public datasets, try: tensorflow/datasets huggingface/datasets

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation This repository contains the Pytorch implementation of the proposed

This repository contains the authors' implementation of the Iterative Retriever, Reader, and Reranker (IRRR) model in the EMNLP 2021 paper "Answering Open-Domain Questions of Varying Reasoning Steps from Text".

chaii - hindi & tamil question answering This is the solution for rank 5th in Kaggle competition: chaii - Hindi and Tamil Question Answering. The comp

VLP This repo hosts the source code for our AAAI2020 work Vision-Language Pre-training (VLP). We have released the pre-trained model on Conceptual Cap

VILLA: Vision-and-Language Adversarial Training This is the official repository of VILLA (NeurIPS 2020 Spotlight). This repository currently supports

This repository contains code for: Fusion-in-Decoder models Distilling Knowledge from Reader to Retriever Dependencies Python 3 PyTorch (currently tes

Gradient Cached Dense Passage Retrieval Gradient Cached Dense Passage Retrieval (GC-DPR) - is an extension of the original DPR library. We introduce G

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

D-VQA We provide the PyTorch implementation for Debiased Visual Question Answering from Feature and Sample Perspectives (NeurIPS 2021). Dependencies P