Python Medical-question-answering Resources

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

Description The source code and data for my paper titled Linguistic Knowledge in Data Augmentation for Natural Language Processing: An Example on Chin

LiVLR-VideoQA We propose a Lightweight Visual-Linguistic Reasoning framework (LiVLR) for VideoQA. The overview of LiVLR: Evaluation on MSRVTT-QA Datas

An question and answer shell environment based on xonsh using ansible for setup

Haystack is an end-to-end framework that enables you to build powerful and production-ready pipelines for different search use cases. Whether you want

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

Turkish Question Generation Offical source code for "Automated question generation & question answering from Turkish texts using text-to-text transfor

aws-documentation We present the AWS documentation corpus, an open-book QA dataset, which contains 25,175 documents along with 100 matched questions a

trfaq Google supported this work by providing Google Cloud credit. Thank you Google for supporting the open source! 🎉 What is this? At this repo, I'm

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Fusion Brain Challenge The English version of the document can be found here. Обновления 01.11 Мы выкладываем пример данных, аналогичных private test

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

Backprop makes it simple to use, finetune, and deploy state-of-the-art ML models. Solve a variety of tasks with pre-trained models or finetune them in

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf

QA Roberta Ru SaaS Question answering on russian with XLMRobertaLarge as a service. Thanks for the model to Alexander Kaigorodov. Stack Flask Gunicorn

CCQA: A New Web-Scale Question Answering Dataset for Model Pre-Training This is the official repository for the code and models of the paper CCQA: A N

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

Entity-Based Knowledge Conflicts in Question Answering Run Instructions | Paper | Citation | License This repository provides the Substitution Framewo

Just Ask: Learning to Answer Questions from Millions of Narrated Videos Webpage • Demo • Paper This repository provides the code for our paper, includ

Greedy Gradient Ensemble for De-biased VQA Code release for "Greedy Gradient Ensemble for Robust Visual Question Answering" (ICCV 2021, Oral). GGE can

Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or

DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning

Introspective Distillation (IntroD) This repository is the Pytorch implementation of our paper "Introspective Distillation for Robust Question Answeri

Data and Code for paper Outlining and Filling: Hierarchical Query Graph Generation for Answering Complex Questions over Knowledge Graph is available f

MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

IconQA About IconQA is a new diverse abstract visual question answering dataset that highlights the importance of abstract diagram understanding and c

jel: Japanese Entity Linker jel - Japanese Entity Linker - is Bi-encoder based entity linker for japanese. Usage Currently, link and question methods

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

Rce-KGQA A novel pipeline framework for multi-hop complex KGQA task. This framework mainly contains two modules, answering_filtering_module and relati

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

Question answering app is used to answer for a user given question from user given text.It is created using HuggingFace's transformer pipeline and streamlit python packages.

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Transformer QG on DRCD The inputs of the model refers to we integrate C and A into a new C' in the following form. C' = [c1, c2, ..., [HL], a1, ..., a

DEEPAGÉ: Answering Questions in Portuguese about the Brazilian Environment This repository is related to the paper DEEPAGÉ: Answering Questions in Por

Macaw Introduction Macaw (Multi-angle c(q)uestion answering) is a ready-to-use model capable of general question answering, showing robustness outside

CoraNet This is the 3D Implementation of 《Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation》 Environment pytor

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

🎵 MuSiQue: Multi-hop Questions via Single-hop Question Composition This is the repository for our paper "MuSiQue: Multi-hop Questions via Single-hop

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

Open-Domain Question-Answering for COVID-19 and Other Emergent Domains This repository contains the source code for an end-to-end open-domain question

Time-Sensitive-QA The repo contains the dataset and code for NeurIPS2021 (dataset track) paper Time-Sensitive Question Answering dataset. The dataset

ANTsPyNet A collection of deep learning architectures and applications ported to the python language and tools for basic medical image processing. Bas

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

A collection of papers about Transformer in the field of medical image analysis.

Open-Domain Question-Answering for COVID-19 and Other Emergent Domains This repository contains the source code for an end-to-end open-domain question

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

======================================== Paper-Question-recognition ======================================== question‘s area recognition using image p

Pano-AVQA Official repository of PanoAVQA: Grounded Audio-Visual Question Answering in 360° Videos (ICCV 2021) [Paper] [Poster] [Video] Getting Starte

example-video-search This is an example of building a video Question-Answer system using Jina. The index data is subtitle files of YouTube videos. Aft

🌈 ERASOR (RA-L'21 with ICRA Option) Official page of "ERASOR: Egocentric Ratio of Pseudo Occupancy-based Dynamic Object Removal for Static 3D Point C

TRAnsformer Routing Networks (TRAR) This is an official implementation for ICCV 2021 paper "TRAR: Routing the Attention Spans in Transformers for Visu

Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)

MADE (Multi-Adapter Dataset Experts) This repository contains the implementation of MADE (Multi-adapter dataset experts), which is described in the pa

A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp

SurRoL IROS 2021 SurRoL: An Open-source Reinforcement Learning Centered and dVRK Compatible Platform for Surgical Robot Learning Features dVRK compati

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

MADE (Multi-Adapter Dataset Experts) This repository contains the implementation of MADE (Multi-adapter dataset experts), which is described in the pa

RNG-KBQA: Generation Augmented Iterative Ranking for Knowledge Base Question Answering Authors: Xi Ye, Semih Yavuz, Kazuma Hashimoto, Yingbo Zhou and

Semi-supervised-learning-for-medical-image-segmentation. Recently, semi-supervised image segmentation has become a hot topic in medical image computin

EFO-1-QA Benchmark for First Order Query Estimation on Knowledge Graphs This repository contains an entire pipeline for the EFO-1-QA benchmark. EFO-1

RE2 This is a pytorch implementation of the ACL 2019 paper "Simple and Effective Text Matching with Richer Alignment Features". The original Tensorflo

2017 VQA Challenge Winner (CVPR'17 Workshop) pytorch implementation of Tips and Tricks for Visual Question Answering: Learnings from the 2017 Challeng

Retina Blood Vessels Segmentation This is an implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional

Tevatron Tevatron is a simple and efficient toolkit for training and running dense retrievers with deep language models. The toolkit has a modularized

A PyTorch implementation of V-Net Vnet is a PyTorch implementation of the paper V-Net: Fully Convolutional Neural Networks for Volumetric Medical Imag

SPARQLing Database Queries from Intermediate Question Decompositions This repo is the implementation of the following paper: SPARQLing Database Querie

EfficientSegmentation Introduction EfficientSegmentation is an open source, PyTorch-based segmentation framework for 3D medical image. Features A whol

MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning [MedIA or Arxiv] and [Demo] This repository pr

This reporistory contains the test-dev data of the paper "xGQA: Cross-lingual Visual Question Answering".

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

End-to-end neural table-text understanding models.

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ