Python Omics-data Resources

Case studies with Bayesian methods

The baseline code is for EDA: Easy Data Augmentation techniques for boosting performance on text classification tasks

img2dataset Easily turn large sets of image urls to an image dataset. Can download, resize and package 100M urls in 20h on one machine. Also supports

✨A Python framework to explore, label, and monitor data for NLP projects

AEDA: An Easier Data Augmentation Technique for Text Classification This is the code for the EMNLP 2021 paper AEDA: An Easier Data Augmentation Techni

CLabel is a terminal-based cluster labeling tool that allows you to explore text data interactively and label clusters based on reviewing that

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

FLAML - Fast and Lightweight AutoML

Add_noise_and_rir_to_speech The purpose of this code base is to add a specified signal-to-noise ratio noise from MUSAN dataset to a pure speech signal

skimpy Welcome Welcome to skimpy! skimpy is a light weight tool that provides summary statistics about variables in data frames within the console. Th

The Devil's Eye searches the darkweb for information relating to the user's query and returns the results including .onion links and their description

EventTranscriptParser EventTranscriptParser is python based tool to extract forensically useful details from EventTranscript.db (Windows Diagnostic Da

wxee What is wxee? wxee was built to make processing gridded, mesoscale time series weather and climate data quick and easy by integrating the data ca

A data parser for the internal syncing data format used by Fog of World. The parser is not designed to be a well-coded library with good performance, it is more like a demo for showing the data structure.

About This repository provides data and code for the paper: Scalable Data Annotation Pipeline for High-Quality Large Speech Datasets Development (subm

Not All Unlabeled Data are Equal: Learning to Weight Data in Semi-supervised Learning Overview This code is for paper: Not All Unlabeled Data are Equa

Goblyn Metadata Enumeration What's Goblyn? Goblyn is a tool focused to enumeration and capture of website files metadata. How it works? Goblyn will se

Wrangl Ray-based parallel data preprocessing for NLP and ML. pip install wrangl # for latest pip install git+https://github.com/vzhong/wrangl See exa

ToxiChat Code and data for the EMNLP 2021 paper "Just Say No: Analyzing the Stance of Neural Dialogue Generation in Offensive Contexts". Install depen

Aqueduct Framework for creating efficient data processing pipelines. Contact Feel free to ask questions in telegram t.me/avito-ml Key Features Increas

DeepConsensus DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS)

Applicator Kit for Modo Applicator Kit for Modo allow you to apply Apple ARKit Face Tracking data from your iPhone or iPad with a TrueDepth camera to

Jir-thief This Module will connect to Jira's API using an access token, export to a word .doc, and download the Jira issues that the target has access

🔧 What is it? Wrench is a benchmark platform containing diverse weak supervision tasks. It also provides a common and easy framework for development

Quantel is a powerful financial data and insights API. It provides easy access to world-class financial information. Quantel goes beyond just financial statements, giving users valuable information like insider transactions, major shareholder transactions, share ownership, peers, and so much more.

Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown

A small set of Python functions to draw pretty maps from OpenStreetMap data. Based on osmnx, matplotlib and shapely libraries.

Symbol Ratios Summary Sector LTP Undervalued Bonus % MEGA Strong Commercial Banks 368 5 10 JBBL Strong Development Banks 568 5 10 SIFC Strong Finance

Text Classification Baseline Pipeline for fast building text classification TF-IDF + LogReg baselines. Usage Instead of writing custom code for specif

GoGettr GoGettr is an API client for GETTR, a "non-bias [sic] social network." (We will not reward their domain with a hyperlink.) GoGettr is built an

Data Augmentation for Scene Text Recognition (ICCV 2021 Workshop) (Pronounced as "strog") Paper Arxiv Why it matters? Scene Text Recognition (STR) req

Filtration Curves for Graph Representation This repository provides the code from the KDD'21 paper Filtration Curves for Graph Representation. Depende

Multi-Modal Self-Supervision using GDT and StiCa This is an official pytorch implementation of papers: Multi-modal Self-Supervision from Generalized D

GenRep Project Page | Paper Generative Models as a Data Source for Multiview Representation Learning Ali Jahanian, Xavier Puig, Yonglong Tian, Phillip

SpiderFoot Neo4j Tools Import, visualize, and analyze SpiderFoot OSINT data in Neo4j, a graph database Step 1: Installation NOTE: This installs the sf

JSON Inline Low code JSON to extract data in one line ENG RU Installation pip install json-inline Usage Rules Modificator Description ?key:value Searc

DeltaCAT DeltaCAT is a Pythonic Data Catalog powered by Ray. Its data storage model allows you to define and manage fast, scalable, ACID-compliant dat

MoVi-Toolbox Data Preparation, Processing, and Visualization for MoVi Data, https://www.biomotionlab.ca/movi/ MoVi is a large multipurpose dataset of

Part-Aware Data Augmentation for 3D Object Detection in Point Cloud This repository contains a reference implementation of our Part-Aware Data Augment

Hurdles to Progress in Long-form Question Answering This repository contains the official scripts and datasets accompanying our NAACL 2021 paper, "Hur

Parametric-Contrastive-Learning This repository contains the implementation code for ICCV2021 paper: Parametric Contrastive Learning (https://arxiv.or

Nasdaq Cloud Data Service (NCDS) Nasdaq Cloud Data Service (NCDS) provides a modern and efficient method of delivery for realtime exchange data and ot

The goal of this project is to provide an alternative way to get realtime data from Binance and use it in freqtrade despite the exchange used. It also uses talipp for computing

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data arXiv This is the code base for weakly supervised NER. We provide a

Aeroespace_GroundStation Script de monitoramento de telemetria para missões espaciais, cansat e foguetemodelismo. Imagem 1 - Dashboard realizando moni

homeassistant-edata Esta integración para Home Assistant te permite seguir de un vistazo tus consumos y máximas potencias alcanzadas. Para ello, se ap

Sample streaming Dataflow pipeline written in Python This repository contains a streaming Dataflow pipeline written in Python with Apache Beam, readin

Custom Natural Language Processing with big and small models 🌲🌱

The Python Extract, Load, Transform Studio is an application for performing ELT (and ETL) tasks. Under the hood the application consists of a two parts.

VisualGPT Our Paper VisualGPT: Data-efficient Adaptation of Pretrained Language Models for Image Captioning Main Architecture of Our VisualGPT Downloa

django-test-migrations Features Allows to test django schema and data migrations Allows to test both forward and rollback migrations Allows to test th

Genalog is an open source, cross-platform python package allowing generation of synthetic document images with custom degradations and text alignment capabilities.

An image labelling tool for creating segmentation data sets, for Django and Flask.

Binance history data downloader Download history data from binance and save to dataframe or csv file

Metaflowbot - Slack Bot for your Metaflow flows! Metaflowbot makes it fun and easy to monitor your Metaflow runs, past and present. Imagine starting a

hex2array-c Creates a C array from a hex-string. Usage Usage: python3 hex2array_c.py HEX_STRING [-h|--help] Use '-' to read the hex string from STDIN.

Selection via Proxy: Efficient Data Selection for Deep Learning This repository contains a refactored implementation of "Selection via Proxy: Efficien

In this repo, you can find the data from our ACL 2021 paper "HateCheck: Functional Tests for Hate Speech Detection Models". "test_suite_cases.csv" con

Synthetic Dataset Generator Authors: Stanislava Fedorova Alberto Tono Meher Shashwat Nigam Jiayao Zhang Amirhossein Ahmadnia Cecilia bolognesi Dominik

Amazon Product Scraper: 2021 Description A command-line tool for scraping Amazon product data to CSV or JSON format(s). Requirements Python 3 pip3 Ins

Data-Annotation-Tool How to Run this Tool? To run this software, follow the steps: git clone https://github.com/Autonomous-Car-Project/Data-Annotation

Scraping COVID-19 data from DDC Dashboard Scraping Thailand COVID-19 data from the DDC's tableau dashboard. Data is updated at 07:30 and 08:00 daily.

DenseClus is a Python module for clustering mixed type data using UMAP and HDBSCAN. Allowing for both categorical and numerical data, DenseClus makes it possible to incorporate all features in clustering.

ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more

Transformers Optimus's transformation plugins are implementations of Task and Hook interfaces that allows execution of arbitrary jobs in optimus. To i

Minimal Ethereum fee data viewer for the terminal, contained in a single python script. Connects to your node and displays some metrics in real-time.

CDK Pipelines for Data Lake Infrastructure Deployment This solution helps you deploy data lake infrastructure on AWS using CDK Pipelines. This is base

Auto-Complete Google Project In this project there is an implementation for one feature of Google's search engines - AutoComplete. Autocomplete, or wo

Proteno This is the data release associated with the corresponding NAACL 2021 Paper - Proteno: Text Normalization with Limited Data for Fast Deploymen

Introduction Code and data for ACL 2021 Paper "Inter-GPS: Interpretable Geometry Problem Solving with Formal Language and Symbolic Reasoning". We cons

OpenGAN: Open-Set Recognition via Open Data Generation ICCV 2021 (oral) Real-world machine learning systems need to analyze novel testing data that di

SimNet: Enabling Robust Unknown Object Manipulation from Pure Synthetic Data via Stereo Thomas Kollar, Michael Laskey, Kevin Stone, Brijen Thananjeyan

Update (20 Jan 2020): MODALS on text data is avialable MODALS MODALS: Modality-agnostic Automated Data Augmentation in the Latent Space Table of Conte

Thailand COVID-19 Cluster Data Extraction About Extract Clusters from Thailand Daily COVID-19 briefing PDF Download latest data Here. Data will be upd

Demo BERT ONNX pipeline written in rust This demo showcase the use of onnxruntime-rs with a GPU on CUDA 11 to run Bert in a data pipeline with Rust. R

Evidently helps analyze machine learning models during validation or production monitoring. The tool generates interactive visual reports and JSON profiles from pandas DataFrame or csv files. Currently 6 reports are available.

Collect super-resolution related papers, data, repositories

crypto-performance-tracker Use this script to track the gains of cryptocurrencies using historical data and display it on a super-imposed chart in ord

The Researcher COVID data Automated data scraper for Thailand COVID-19 data Accessing the Data 1st Dose Provincial Vaccination Data 2nd Dose Provincia

Random Erasing Data Augmentation =============================================================== black white random This code has the source code for

Deep Continuous Clustering Introduction This is a Pytorch implementation of the DCC algorithms presented in the following paper (paper): Sohil Atul Sh

A curated list of amazingly awesome Cybersecurity datasets

A python application for manipulating pandas data frames from the comfort of your web browser. Data flows are represented as a Directed Acyclic Graph, and nodes can be ran individually as the user sees fit.

Self-Tuning for Data-Efficient Deep Learning This repository contains the implementation code for paper: Self-Tuning for Data-Efficient Deep Learning

With CueObserve, you can run anomaly detection on data in your SQL data warehouses and databases. Getting Started Install via Docker docker run -p 300

IDRLnet IDRLnet is a machine learning library on top of PyTorch. Use IDRLnet if you need a machine learning library that solves both forward and inver

DataFree A benchmark of data-free knowledge distillation from paper "Contrastive Model Inversion for Data-Free Knowledge Distillation" Authors: Gongfa

Deduplicating Training Data Makes Language Models Better This repository contains code to deduplicate language model datasets as descrbed in the paper

SimNet: Enabling Robust Unknown Object Manipulation from Pure Synthetic Data via Stereo Thomas Kollar, Michael Laskey, Kevin Stone, Brijen Thananjeyan

Pynixutil - Utility functions for working with data from Nix in Python Examples Base32 encoding/decoding import pynixutil input = "v5sv61sszx301i0x6x

This library was developed in order to facilitate rapid prototyping in Python of predictive machine-learning models using longitudinal medical data from an OMOP CDM-standard database.

NeuralCompression is a Python repository dedicated to research of neural networks that compress data. The repository includes tools such as JAX-based entropy coders, image compression models, video compression models, and metrics for image and video evaluation.

Open-source tool for exploring, labeling, and monitoring data for AI projects

A PyTorch Reproduction of HCN Co-occurrence Feature Learning from Skeleton Data for Action Recognition and Detection with Hierarchical Aggregation. Ch

DrQ-v2: Improved Data-Augmented RL Agent Method DrQ-v2 is a model-free off-policy algorithm for image-based continuous control. DrQ-v2 builds on DrQ,

Pandas Tab Implementation of Stata's tabulate command in Pandas for extremely easy to type one-way and two-way tabulations. Support: Python 3.7 and 3.

Knockoff Factory A library for generating mock data and creating database fixtures that can be used for unit testing. Table of content Installation Ch

LiDAR-MOS: Moving Object Segmentation in 3D LiDAR Data This repo contains the code for our paper: Moving Object Segmentation in 3D LiDAR Data: A Learn

GIANT Code and data for paper "GIANT: Scalable Creation of a Web-scale Ontology" https://arxiv.org/pdf/2004.02118.pdf Please cite our paper if this pr

Random Shadows and Highlights This repo has the source code for the paper: Random Shadows and Highlights: A new data augmentation method for extreme l