Python Genome-scale-models Resources

Resilience from Diversity: Population-based approach to harden models against adversarial attacks Requirements To install requirements: pip install -r

slue-toolkit We introduce Spoken Language Understanding Evaluation (SLUE) benchmark. This toolkit provides codes to download and pre-process the SLUE

large-scale-ITE-UM-benchmark This repository contains code and data to reproduce the results of the paper "A Large Scale Benchmark for Individual Trea

DSPoint Official pytorch implementation of "DSPoint: Dual-scale Point Cloud Recognition with High-frequency Fusion" Coming soon, as soon as I finish a

Score-Based Generative Modeling through Stochastic Differential Equations This repo contains a PyTorch implementation for the paper Score-Based Genera

mtomo Multiple types of NN model optimization environments. It is possible to directly access the host PC GUI and the camera to verify the operation.

Emotion Recognition in Conversations Updates 🔥 🔥 🔥 Date Announcements 03/08/2021 🎆 🎆 We have released a new dataset M2H2: A Multimodal Multiparty

Welcome MICOM is a Python package for metabolic modeling of microbial communities currently developed in the Gibbons Lab at the Institute for Systems

A python package to manage the stored receiver-side Strain Green's Tensor (SGT) database of 3D background models and able to generate Green's function and synthetic waveform

networkgen A python module to create random networks using network models Usage $

This is Pygrr PolyArt, a program used for drawing custom Polygon models for your Pygrr project!

'db' within pydantic - A single model for shaping, creating, accessing, storing data within a Database Key Features Integrated Redis Caching Support A

How to use TensorLayer While research in Deep Learning continues to improve the world, we use a bunch of tricks to implement algorithms with TensorLay

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

SageMaker Python SDK SageMaker Python SDK is an open source library for training and deploying machine learning models on Amazon SageMaker. With the S

BERT ***** New March 11th, 2020: Smaller BERT Models ***** This is a release of 24 smaller BERT models (English only, uncased, trained with WordPiece

zeroshot_topics Table of Contents Installation Usage License Installation zeroshot_topics is distributed on PyPI as a universal wheel and is available

Biterm Topic Model Bitermplus implements Biterm topic model for short texts introduced by Xiaohui Yan, Jiafeng Guo, Yanyan Lan, and Xueqi Cheng. Actua

IntroNeuralNetworks in Python: A Template Project IntroNeuralNetworks is a project that introduces neural networks and illustrates an example of how o

🤗 Hugging Face Transformer submillisecond inference 🤯 and deployment on Nvidia Triton server Yes, you can perfom inference with transformer based mo

Twitter COVID-19 Sentiment Analysis Members: Christopher Bach | Khalid Hamid Fallous | Jay Hirpara | Jing Tang | Graham Thomas | David Wetherhold Pro

Learning Causal Semantic Representation for Out-of-Distribution Prediction This repository is the official implementation of "Learning Causal Semantic

go-cqhttp API typing annoations, return data models and utils for nonebot

Hyperlinks for pydantic models In a typical web application relationships between resources are modeled by primary and foreign keys in a database (int

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

ML Privacy Meter Machine learning is playing a central role in automated decision making in a wide range of organization and service providers. The da

SummaC: Summary Consistency Detection This repository contains the code for TACL2021 paper: SummaC: Re-Visiting NLI-based Models for Inconsistency Det

Spanish Language Models 💃🏻 A repository part of the MarIA project. Corpora 📃 Corpora Number of documents Number of tokens Size (GB) BNE 201,080,084

[arXiv] The main motivation of the SHIFT15M project is to provide a dataset that contains natural dataset shifts collected from a web service IQON, wh

HyperMix Code for our paper GPT3Mix and conducting classification experiments using GPT-3 prompt-based data augmentation. Getting Started Installing P

InvTorch: Memory-Efficient Invertible Functions This module extends the functionality of torch.utils.checkpoint.checkpoint to work with invertible fun

Experimental code for paper: Generative Adversarial Networks as Variational Training of Energy Based Models, under review at ICLR 2017 requirements: T

Defense-GAN: Protecting Classifiers Against Adversarial Attacks Using Generative Models Pouya Samangouei*, Maya Kabkab*, Rama Chellappa [*: authors co

AmbientGAN: Generative models from lossy measurements This repository provides code to reproduce results from the paper AmbientGAN: Generative models

Adversarial Video Generation This project implements a generative adversarial network to predict future frames of video, as detailed in "Deep Multi-Sc

A Tensorflow implementation of the Text Conditioned Auxiliary Classifier Generative Adversarial Network for Generating Images from text descriptions

Some tentative models that incorporate label propagation to graph neural networks for graph representation learning in nodes, links or graphs.

Image Super-Resolution (ISR) The goal of this project is to upscale and improve the quality of low resolution images. This project contains Keras impl

Ladder Variational Autoencoders (LVAE) PyTorch implementation of Ladder Variational Autoencoders (LVAE) [1]: where the variational distributions q at

tensorflow-generative-model-collections Tensorflow implementation of various GANs and VAEs. Related Repositories Pytorch version Pytorch version of th

Hummingbird Introduction Hummingbird is a library for compiling trained traditional ML models into tensor computations. Hummingbird allows users to se

LowRankModels.jl LowRankModels.jl is a Julia package for modeling and fitting generalized low rank models (GLRMs). GLRMs model a data array by a low r

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

health-lesion-stovol healthy and lesion models for learning based on the joint estimation of stochasticity and volatility Reference please cite this p

High performance distributed framework for training deep learning recommendation models based on PyTorch.

CCQA: A New Web-Scale Question Answering Dataset for Model Pre-Training This is the official repository for the code and models of the paper CCQA: A N

vartests is a Python library to perform some statistic tests to evaluate Value at Risk (VaR) Models, such as: T-test: verify if mean of distribution i

Scalable Intervention Target Estimation in Linear Models Implementation of the paper Scalable Intervention Target Estimation in Linear Models (NeurIPS

Release of AutoGMap:Learning to Map Large-scale Sparse Graphs on Memristive Crossbar For reproduction of our searched model, the Ubuntu OS is recommen

Spectral-spatial contrastive clustering (SSCC) Yaoming Cai, Yan Liu, Zijia Zhang, Zhihua Cai, and Xiaobo Liu, Large-scale Hyperspectral Image Clusteri

RobustBioNLP Improving the robustness and performance of biomedical NLP models through adversarial training In this repository you can find suppliment

diffusion-channels Source code for paper "Deep Diffusion Models for Robust Channel Estimation". Generic flow: Use 'matlab/main.mat' to generate traini

Interpreting Language Models Through Knowledge Graph Extraction Idea: How do we interpret what a language model learns at various stages of training?

AfriBERTa: Exploring the Viability of Pretrained Multilingual Language Models for Low-resourced Languages This repository contains the code for the pa

MuMMI RAS v0.1 Released: Nov 16, 2021 MuMMI RAS is the application component of the MuMMI framework developed to create large-scale ML-driven multisca

liquid_scikit_learn Scikit learn library models to account for data and concept drift. This python library focuses on solving data drift and concept d

survivalstan: Survival Models in Stan author: Jacki Novik Overview Library of Stan Models for Survival Analysis Features: Variety of standard survival

Python Causal Impact Causal inference using Bayesian structural time-series models. This package aims at defining a python equivalent of the R CausalI

DoWhy | An end-to-end library for causal inference Amit Sharma, Emre Kiciman Introducing DoWhy and the 4 steps of causal inference | Microsoft Researc

Responsible Machine Learning With Great Power Comes Great Responsibility. Voltaire (well, maybe) How to develop machine learning models in a responsib

InterpretML - Alpha Release In the beginning machines learned in darkness, and data scientists struggled in the void to explain them. Let there be lig

AdaNet is a lightweight TensorFlow-based framework for automatically learning high-quality models with minimal expert intervention. AdaNet buil

Donkeycar is minimalist and modular self driving library for Python. It is developed for hobbyists and students with a focus on allowing fast experimentation and easy community contributions.

m2cgen (Model 2 Code Generator) - is a lightweight library which provides an easy way to transpile trained statistical models into a native code

Model Serving Made Easy BentoML is a flexible, high-performance framework for serving, managing, and deploying machine learning models. Supports multi

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Laplacian Pyramid Reconstruction and Refinement for Semantic Segmentation This repository contains code and models for the method described in: Golnaz

PixelNet: Representation of the pixels, by the pixels, and for the pixels. We explore design principles for general pixel-level prediction problems, f

semantic-segmentation-tensorflow This is a Tensorflow implementation of semantic segmentation models on MIT ADE20K scene parsing dataset and Cityscape

Semantic Segmentation in PyTorch Semantic Segmentation in PyTorch Requirements Main Features Models Datasets Losses Learning rate schedulers Data augm

Python library with Neural Networks for Image Segmentation based on Keras and TensorFlow. The main features of this library are: High level API (just

Image Segmentation Keras : Implementation of Segnet, FCN, UNet, PSPNet and other models in Keras. Implementation of various Deep Image Segmentation mo

ZF_UNET_224 Pretrained Model Modification of convolutional neural net "UNET" for image segmentation in Keras framework Requirements Python 3.*, Keras

PyTorch-LIT PyTorch-LIT is the Lite Inference Toolkit (LIT) for PyTorch which focuses on easy and fast inference of large models on end-devices. With

G2S This is the official code for ICRA 2021 Paper: Multimodal Scale Consistency and Awareness for Monocular Self-Supervised Depth Estimation by Hemang

AlbUNet-1D-2D-Tensorflow-Keras This repository contains 1D and 2D Signal Segmentation Model Builder for AlbUNet and several of its variants developed

pygsflow pyGSFLOW is a python package to Create, Read, Write, Edit, and Visualize GSFLOW models API Documentation pyGSFLOW API documentation can be fo

ResNEsts and DenseNEsts: Block-based DNN Models with Improved Representation Guarantees This repository is the official implementation of the empirica

Luminous is a framework for testing the performance of Embodied AI (EAI) models in indoor tasks. Generally, we intergrete different kind of functional

Climate Modeling with Neural Diffusion Equation Introduction This is the repository of our accepted ICDM 2021 paper "Climate Modeling with Neural Diff

gff-rename Replace the sequence IDs in a gff3 file with a set of provided sequence IDs from a genom.fasta. This is useful when a gff3 file is retrieve

Deep Neural Network Prediction Step 1. Genernate random parameters and Run them sequentially : $ python3 collect_data.py -gp -ep -pp -pl pooling -num

Distribution System Model Calibration Algorithms The code in this library was developed by Sandia National Laboratories under funding provided by the

Large Scale Learning on Non-Homophilous Graphs: New Benchmarks and Strong Simple Methods Large Scale Learning on Non-Homophilous Graphs: New Benchmark

ACAV100M: Automatic Curation of Large-Scale Datasets for Audio-Visual Video Representation Learning This repository contains the code for our ICCV 202

Pano3D A Holistic Benchmark and a Solid Baseline for 360o Depth Estimation Pano3D is a new benchmark for depth estimation from spherical panoramas. We

FPS-Net Code for "FPS-Net: A convolutional fusion network for large-scale LiDAR point cloud segmentation", accepted by ISPRS journal of Photogrammetry

ESPEI ESPEI, or Extensible Self-optimizing Phase Equilibria Infrastructure, is a tool for thermodynamic database development within the CALPHAD method

What is Viridicle? Viridicle is a library for simulating stochastic graphical ecological models. It implements the continuous time models described in

Analysis of cross-lingual citations in English papers Contents initial_analysis Source code, data, and evaluation details as published at ICADL2020 ci

AI-UPV at IberLEF-2021 EXIST task: Sexism Prediction in Spanish and English Tweets Using Monolingual and Multilingual BERT and Ensemble Models Descrip

AI-UPV at IberLEF-2021 DETOXIS task: Toxicity Detection in Immigration-Related Web News Comments Using Transformers and Statistical Models Description

Multiscale Deep Equilibrium Models 💥 💥 💥 💥 This repo is deprecated and we will soon stop actively maintaining it, as a more up-to-date (and simple

Introduction Official implementation of "Membership Inference Attacks Against Self-supervised Speech Models". In this work, we demonstrate that existi

Self-Supervised Collision Handling via Generative 3D Garment Models for Virtual Try-On [Project website] [Dataset] [Video] Abstract We propose a new g

NLP From Scratch Without Large-Scale Pretraining This repository contains the code, pre-trained model checkpoints and curated datasets for our paper:

Blendshape and kinematics solver for Mediapipe/Tensorflow.js face, eyes, pose, and hand tracking models.

collision_risk_estimation Collision risk estimation using stochastic motion models. This is a new approach, based on stochastic models, to predict the

POS-Tagger This repository details the creation of a Part-of-Speech tagger using Trigram Hidden Markov Models to predict word tags in a word sequence.