180 Repositories
Python imaging-lidar Libraries
[ICCV 2021] HRegNet: A Hierarchical Network for Large-scale Outdoor LiDAR Point Cloud Registration
HRegNet: A Hierarchical Network for Large-scale Outdoor LiDAR Point Cloud Registration Introduction The repository contains the source code and pre-tr
Exploring Simple 3D Multi-Object Tracking for Autonomous Driving (ICCV 2021)
Exploring Simple 3D Multi-Object Tracking for Autonomous Driving Chenxu Luo, Xiaodong Yang, Alan Yuille Exploring Simple 3D Multi-Object Tracking for
Perception-aware multi-sensor fusion for 3D LiDAR semantic segmentation (ICCV 2021)
Perception-Aware Multi-Sensor Fusion for 3D LiDAR Semantic Segmentation (ICCV 2021) [中文|EN] 概述 本工作主要探索一种高效的多传感器(激光雷达和摄像头)融合点云语义分割方法。现有的多传感器融合方法主要将点云投影
A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.
meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av
small package with utility functions for analyzing (fly) calcium imaging data
fly2p Tools for analyzing two-photon (2p) imaging data collected with Vidrio Scanimage software and micromanger. Loading scanimage data relies on scan
Codes for CVPR2021 paper "PWCLO-Net: Deep LiDAR Odometry in 3D Point Clouds Using Hierarchical Embedding Mask Optimization"
PWCLO-Net: Deep LiDAR Odometry in 3D Point Clouds Using Hierarchical Embedding Mask Optimization (CVPR 2021) This is the official implementation of PW
Neural Nano-Optics for High-quality Thin Lens Imaging
Neural Nano-Optics for High-quality Thin Lens Imaging Project Page | Paper | Data Ethan Tseng, Shane Colburn, James Whitehead, Luocheng Huang, Seung-H
An implementation on "Curved-Voxel Clustering for Accurate Segmentation of 3D LiDAR Point Clouds with Real-Time Performance"
Lidar-Segementation An implementation on "Curved-Voxel Clustering for Accurate Segmentation of 3D LiDAR Point Clouds with Real-Time Performance" from
Non-Imaging Transient Reconstruction And TEmporal Search (NITRATES)
Non-Imaging Transient Reconstruction And TEmporal Search (NITRATES) This repo contains the full NITRATES pipeline for maximum likelihood-driven discov
[v1 (ISBI'21) + v2] MedMNIST: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image Classification
MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili
An interactive tool with which to explore the possible imaging performance of candidate ngEHT architectures.
ngEHTexplorer An interactive tool with which to explore the possible imaging performance of candidate ngEHT architectures. Welcome! ngEHTexplorer is a
MultiMix: Sparingly Supervised, Extreme Multitask Learning From Medical Images (ISBI 2021, MELBA 2021)
MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,
EgoNN: Egocentric Neural Network for Point Cloud Based 6DoF Relocalization at the City Scale
EgonNN: Egocentric Neural Network for Point Cloud Based 6DoF Relocalization at the City Scale Paper: EgoNN: Egocentric Neural Network for Point Cloud
A LiDAR point cloud cluster for panoptic segmentation
Divide-and-Merge-LiDAR-Panoptic-Cluster A demo video of our method with semantic prior: More information will be coming soon! As a PhD student, I don'
Official and maintained implementation of the paper "OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data" [BMVC 2021].
OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr
Official and maintained implementation of the paper "OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data" [BMVC 2021].
OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr
starfish is a Python library for processing images of image-based spatial transcriptomics.
starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics
Command line utility for converting images to seamless tiles
img2texture Command line utility for converting images to seamless tiles. The resulting tiles can be used as textures in games, compositing and 3D mod
Benchmark tools for Compressive LiDAR-to-map registration
Benchmark tools for Compressive LiDAR-to-map registration This repo contains the released version of code and datasets used for our IROS 2021 paper: "
MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.
MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.
Continuous Time LiDAR odometry
CT-ICP: Elastic SLAM for LiDAR sensors This repository implements the SLAM CT-ICP (see our article), a lightweight, precise and versatile pure LiDAR o
Advancing Self-supervised Monocular Depth Learning with Sparse LiDAR
Official implementation for paper "Advancing Self-supervised Monocular Depth Learning with Sparse LiDAR"
Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)
Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp
PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)
Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd
[MICCAI'20] AlignShift: Bridging the Gap of Imaging Thickness in 3D Anisotropic Volumes
AlignShift NEW: Code for our new MICCAI'21 paper "Asymmetric 3D Context Fusion for Universal Lesion Detection" will also be pushed to this repository
SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications.
Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications
An extremely simple, intuitive, hardware-friendly, and well-performing network structure for LiDAR semantic segmentation on 2D range image. IROS21
FIDNet_SemanticKITTI Motivation Implementing complicated network modules with only one or two points improvement on hardware is tedious. So here we pr
Dense Deep Unfolding Network with 3D-CNN Prior for Snapshot Compressive Imaging, ICCV2021 [PyTorch Code]
Dense Deep Unfolding Network with 3D-CNN Prior for Snapshot Compressive Imaging, ICCV2021 [PyTorch Code]
The friendly PIL fork (Python Imaging Library)
Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund
Python wrappers for external BART computational imaging tools and internal libraries
bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo
This is an example of object detection on Micro bacterium tuberculosis using Mask-RCNN
Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN
This is an example of object detection on Micro bacterium tuberculosis using Mask-RCNN
Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN
Self-Supervised Pillar Motion Learning for Autonomous Driving (CVPR 2021)
Self-Supervised Pillar Motion Learning for Autonomous Driving Chenxu Luo, Xiaodong Yang, Alan Yuille Self-Supervised Pillar Motion Learning for Autono
A scalable implementation of WobblyStitcher for 3D microscopy images
WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ
TorchIO is a Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.
Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.
Fog Simulation on Real LiDAR Point Clouds for 3D Object Detection in Adverse Weather
LiDAR fog simulation Created by Martin Hahner at the Computer Vision Lab of ETH Zurich. This is the official code release of the paper Fog Simulation
Part-Aware Data Augmentation for 3D Object Detection in Point Cloud
Part-Aware Data Augmentation for 3D Object Detection in Point Cloud This repository contains a reference implementation of our Part-Aware Data Augment
Automatic Calibration for Non-repetitive Scanning Solid-State LiDAR and Camera Systems
ACSC Automatic extrinsic calibration for non-repetitive scanning solid-state LiDAR and camera systems. System Architecture 1. Dependency Tested with U
ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more
ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more
Code associated with the paper "Deep Optics for Single-shot High-dynamic-range Imaging"
Deep Optics for Single-shot High-dynamic-range Imaging Code associated with the paper "Deep Optics for Single-shot High-dynamic-range Imaging" CVPR, 2
Synthetic LiDAR sequential point cloud dataset with point-wise annotations
SynLiDAR dataset: Learning From Synthetic LiDAR Sequential Point Cloud This is official repository of the SynLiDAR dataset. For technical details, ple
Moving Object Segmentation in 3D LiDAR Data: A Learning-based Approach Exploiting Sequential Data
LiDAR-MOS: Moving Object Segmentation in 3D LiDAR Data This repo contains the code for our paper: Moving Object Segmentation in 3D LiDAR Data: A Learn
Self-supervised Deep LiDAR Odometry for Robotic Applications
DeLORA: Self-supervised Deep LiDAR Odometry for Robotic Applications Overview Paper: link Video: link ICRA Presentation: link This is the correspondin
LiDAR R-CNN: An Efficient and Universal 3D Object Detector
LiDAR R-CNN: An Efficient and Universal 3D Object Detector Introduction This is the official code of LiDAR R-CNN: An Efficient and Universal 3D Object
Cancer metastasis detection with neural conditional random field (NCRF)
NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast
Kaggle | 9th place single model solution for TGS Salt Identification Challenge
UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
DLL: Direct Lidar Localization
DLL: Direct Lidar Localization Summary This package presents DLL, a direct map-based localization technique using 3D LIDAR for its application to aeri
Point Cloud Denoising input segmentation output raw point-cloud valid/clear fog rain de-noised Abstract Lidar sensors are frequently used in environme
Point Cloud Denoising input segmentation output raw point-cloud valid/clear fog rain de-noised Abstract Lidar sensors are frequently used in environme
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi
This repository is an open-source implementation of the ICRA 2021 paper: Locus: LiDAR-based Place Recognition using Spatiotemporal Higher-Order Pooling.
Locus This repository is an open-source implementation of the ICRA 2021 paper: Locus: LiDAR-based Place Recognition using Spatiotemporal Higher-Order
T-LOAM: Truncated Least Squares Lidar-only Odometry and Mapping in Real-Time
T-LOAM: Truncated Least Squares Lidar-only Odometry and Mapping in Real-Time The first Lidar-only odometry framework with high performance based on tr
chen2020iros: Learning an Overlap-based Observation Model for 3D LiDAR Localization.
Overlap-based 3D LiDAR Monte Carlo Localization This repo contains the code for our IROS2020 paper: Learning an Overlap-based Observation Model for 3D
Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving
SalsaNext: Fast, Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving Abstract In this paper, we introduce SalsaNext f
The repo of the preprinting paper "Labels Are Not Perfect: Inferring Spatial Uncertainty in Object Detection"
Inferring Spatial Uncertainty in Object Detection A teaser version of the code for the paper Labels Are Not Perfect: Inferring Spatial Uncertainty in
Radar-to-Lidar: Heterogeneous Place Recognition via Joint Learning
radar-to-lidar-place-recognition This page is the coder of a pre-print, implemented by PyTorch. If you have some questions on this project, please fee
This is a package for LiDARTag, described in paper: LiDARTag: A Real-Time Fiducial Tag System for Point Clouds
LiDARTag Overview This is a package for LiDARTag, described in paper: LiDARTag: A Real-Time Fiducial Tag System for Point Clouds (PDF)(arXiv). This wo
Range Image-based LiDAR Localization for Autonomous Vehicles Using Mesh Maps
Range Image-based 3D LiDAR Localization This repo contains the code for our ICRA2021 paper: Range Image-based LiDAR Localization for Autonomous Vehicl
LVI-SAM: Tightly-coupled Lidar-Visual-Inertial Odometry via Smoothing and Mapping
LVI-SAM This repository contains code for a lidar-visual-inertial odometry and mapping system, which combines the advantages of LIO-SAM and Vins-Mono
This is the official implementation of 3D-CVF: Generating Joint Camera and LiDAR Features Using Cross-View Spatial Feature Fusion for 3D Object Detection, built on SECOND.
3D-CVF This is the official implementation of 3D-CVF: Generating Joint Camera and LiDAR Features Using Cross-View Spatial Feature Fusion for 3D Object
A medical imaging framework for Pytorch
Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo
ArcGIS Python Toolbox for WhiteboxTools
WhiteboxTools-ArcGIS ArcGIS Python Toolbox for WhiteboxTools. This repository is related to the ArcGIS Python Toolbox for WhiteboxTools, which is an A
WhiteboxTools Python Frontend
whitebox-python Important Note This repository is related to the WhiteboxTools Python Frontend only. You can report issues to this repo if you have pr
A Python package for delineating nested surface depressions from digital elevation data.
Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I
Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee
The code release of paper 'Domain Generalization for Medical Imaging Classification with Linear-Dependency Regularization' NIPS 2020.
Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me
Poisson Surface Reconstruction for LiDAR Odometry and Mapping
Poisson Surface Reconstruction for LiDAR Odometry and Mapping Surfels TSDF Our Approach Table: Qualitative comparison between the different mapping te
SSL_SLAM2: Lightweight 3-D Localization and Mapping for Solid-State LiDAR (mapping and localization separated) ICRA 2021
SSL_SLAM2 Lightweight 3-D Localization and Mapping for Solid-State LiDAR (Intel Realsense L515 as an example) This repo is an extension work of SSL_SL
test
Lidar-data-decode In this project, you can decode your lidar data frame(pcap file) and make your own datasets(test dataset) in Windows without any hug
3D medical imaging reconstruction software
InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu
Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation"
Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo
CLOCs: Camera-LiDAR Object Candidates Fusion for 3D Object Detection
CLOCs is a novel Camera-LiDAR Object Candidates fusion network. It provides a low-complexity multi-modal fusion framework that improves the performance of single-modality detectors. CLOCs operates on the combined output candidates of any 3D and any 2D detector, and is trained to produce more accurate 3D and 2D detection results.
3D Reconstruction Software
Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou
Transfer SemanticKITTI labeles into other dataset/sensor formats.
LiDAR-Transfer Transfer SemanticKITTI labeles into other dataset/sensor formats. Content Convert datasets (NUSCENES, FORD, NCLT) to KITTI format Minim
An interactive GUI for WhiteboxTools in a Jupyter-based environment
whiteboxgui An interactive GUI for WhiteboxTools in a Jupyter-based environment GitHub repo: https://github.com/giswqs/whiteboxgui Documentation: http
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t
Machine learning for NeuroImaging in Python
nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc
The friendly PIL fork (Python Imaging Library)
Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund