Python Medical-robotics Resources

Hierarchical Cross-Modal Agent for Robotics Vision-and-Language Navigation This repository is the pytorch implementation of our paper: Hierarchical Cr

DeLORA: Self-supervised Deep LiDAR Odometry for Robotic Applications Overview Paper: link Video: link ICRA Presentation: link This is the correspondin

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

UACANet: Uncertainty Aware Context Attention for Polyp Segmentation Official pytorch implementation of UACANet: Uncertainty Aware Context Attention fo

MONAI Label is a server-client system that facilitates interactive medical image annotation by using AI. It is an open-source and easy-to-install ecosystem that can run locally on a machine with one or two GPUs. Both server and client work on the same/different machine. However, initial support for multiple users is restricted. It shares the same principles with MONAI.

Motion Planner Augmented Reinforcement Learning for Robot Manipulation in Obstructed Environments [Project website] [Paper] This project is a PyTorch

CLIPPER: A Graph-Theoretic Framework for Robust Data Association Data association is a fundamental problem in robotics and autonomy. CLIPPER provides

PyMedPhys is an open-source Medical Physics python library built by an open community that values and prioritises code sharing, review, improvement, and learning from each other. I

Swin-Unet The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"(https://arxiv.org/abs/2105.05537). A validatio

What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

GraspNet Baseline Baseline model for "GraspNet-1Billion: A Large-Scale Benchmark for General Object Grasping" (CVPR 2020). [paper] [dataset] [API] [do

This is the dataset and code release of the OpenRooms Dataset.

Locus This repository is an open-source implementation of the ICRA 2021 paper: Locus: LiDAR-based Place Recognition using Spatiotemporal Higher-Order

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus General info This is

FastFlowNet: A Lightweight Network for Fast Optical Flow Estimation The official PyTorch implementation of FastFlowNet (ICRA 2021). Authors: Lingtong

Clairvoyance: A Pipeline Toolkit for Medical Time Series Authors: van der Schaar Lab This repository contains implementations of Clairvoyance: A Pipel

Medical Image Segmentation using Squeeze-and-Expansion Transformers Introduction This repository contains the code of the IJCAI'2021 paper 'Medical Im

Hierarchical Cross-Modal Agent for Robotics Vision-and-Language Navigation This repository is the pytorch implementation of our paper: Hierarchical Cr

PythonRobotics Python codes for robotics algorithm. Table of Contents What is this? Requirements Documentation How to use Localization Extended Kalman

PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.

ViT-V-Net: Vision Transformer for Volumetric Medical Image Registration keywords: vision transformer, convolutional neural networks, image registratio

A curated list of awesome anomaly detection works in medical imaging, inspired by the other awesome-* initiatives.

LiDARTag Overview This is a package for LiDARTag, described in paper: LiDARTag: A Real-Time Fiducial Tag System for Point Clouds (PDF)(arXiv). This wo

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

Synergies Between Affordance and Geometry: 6-DoF Grasp Detection via Implicit Representations Zhenyu Jiang, Yifeng Zhu, Maxwell Svetlik, Kuan Fang, Yu

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

A collection of loss functions for medical image segmentation

SASSnet Code for paper: Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Images(MICCAI 2020) Our code is origin from UA-MT You can fin

Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me

spatial-action-maps Update: Please see our new spatial-intention-maps repository, which extends this work to multi-agent settings. It contains many ne

spatial-intention-maps This code release accompanies the following paper: Spatial Intention Maps for Multi-Agent Mobile Manipulation Jimmy Wu, Xingyua

FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space by Quande Liu, Cheng Chen, Ji

Kalman Filter in Python This is a basic example of how Kalman filter works in Python. I do plan on refactoring and expanding this repo in the future.

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

SSL_SLAM2 Lightweight 3-D Localization and Mapping for Solid-State LiDAR (Intel Realsense L515 as an example) This repo is an extension work of SSL_SL

CoTr: Efficient 3D Medical Image Segmentation by bridging CNN and Transformer This is the official pytorch implementation of the CoTr: Paper: CoTr: Ef

Object Pose Estimation Demo This tutorial will go through the steps necessary to perform pose estimation with a UR3 robotic arm in Unity. You’ll gain

SafeOpt - Safe Bayesian Optimization This code implements an adapted version of the safe, Bayesian optimization algorithm, SafeOpt [1], [2]. It also p

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

Ravens is a collection of simulated tasks in PyBullet for learning vision-based robotic manipulation, with emphasis on pick and place. It features a Gym-like API with 10 tabletop rearrangement tasks, each with (i) a scripted oracle that provides expert demonstrations (for imitation learning), and (ii) reward functions that provide partial credit (for reinforcement learning).

Pytorch Medical Segmentation Read Chinese Introduction：Here！ Recent Updates 2021.1.8 The train and test codes are released. 2021.2.6 A bug in dice was

简体中文 | English PaddleRobotics paddleRobotics是基于paddle的机器人开源算法库集，包括人机交互、复杂运动控制、环境感知、slam定位导航等开源算法部分。 人机交互 主动多模交互技术TFVT-HRI 主动多模交互技术是通过视觉、语音、触摸传感器等输入机器人

Context Matters: Graph-based Self-supervised Representation Learning for Medical Images Official PyTorch implementation for paper Context Matters: Gra

Meta-World Meta-World is an open-source simulated benchmark for meta-reinforcement learning and multi-task learning consisting of 50 distinct robotic