Python Medical-robotics Resources

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

robo-gym-server-modules Robot Servers and Server Manager software for robo-gym. For info on how to use this package please visit the robo-gym website

Self-Supervised Policy Adaptation during Deployment PyTorch implementation of PAD and evaluation benchmarks from Self-Supervised Policy Adaptation dur

Final project Final project Update Foundations Ubuntu virtual machine Ubuntu How to use Github to keep tracking the change of code version? Docker Set

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

Robotics Toolbox for Python A Python implementation of the Robotics Toolbox for MATLAB® GitHub repository Documentation Wiki (examples and details) Sy

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

pybullet-planning (previously ss-pybullet) A repository of PyBullet utility functions for robotic motion planning, manipulation planning, and task and

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf

dm_robotics: Libraries, tools, and tasks created and used for Robotics research at DeepMind. Package overview Package Summary Transformations Rigid bo

Navigation 2 SLAM Example This example provides a Unity Project and a colcon workspace that, when used together, allows a user to substitute Unity as

A distributed, plug-n-play algorithm for multi-robot applications with a priori non-computable objective functions Kapoutsis, A.C., Chatzichristofis,

Learning to Execute (L2E) Official code base for completely reproducing all results reported in I.Schubert, D.Driess, O.Oguz, and M.Toussaint: Learnin

x-magical x-magical is a benchmark extension of MAGICAL specifically geared towards cross-embodiment imitation. The tasks still provide the Demo/Test

This is Python API for Agilex Robotics Mobile base This is a python API for Can communication with Agilex Robotics Mobile base and controlling it. Sup

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

gym_multirotor Gym to train reinforcement learning agents on UAV platforms Quadrotor Tiltrotor Requirements This package has been tested on Ubuntu 18.

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using

Autonomous Ground Vehicle Navigation and Control Simulation Examples in Python THIS PROJECT IS CURRENTLY A WORK IN PROGRESS AND THUS THIS REPOSITORY I

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or

Robot Action Primitives (RAPS) This repository is the official implementation of Accelerating Robotic Reinforcement Learning via Parameterized Action

Distilling Motion Planner Augmented Policies into Visual Control Policies for Robot Manipulation [Project website] [Paper] This project is a PyTorch i

DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning

MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

Planning Algorithms in AI and Robotics course T2 2021-22 The Planning Algorithms in AI and Robotics course at Skoltech, MS in Data Science, during T2,

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

airbotics The ROS package for Airbotics: Developed for ROS 1 and Python 3.8. The package has not been officially released on ROS yet so manual install

We proposed a new approach to detect anomalies of mobile robot data. We investigate each data seperately with two clustering method hierarchical and k-means. There are two sub-method that we used for produce an anomaly score. Then, we merge these two score and produce merged anomaly score as a result.

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

Programação de Sistemas Robóticos Miguel Riem Oliveira Universidade de Aveiro 2021-2022 Projeto AtlasCar Projecto RACE IROS 2014 AtlasCar2 ATOM IROS 2

Dorna-Robotics-Internship Code In the directory "Code" is a python file which I wrote to allow the Dorna Robots API to draw an Image on a 3D plane. I

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

This repository contains code for training and evaluating FlingBot in both simulation and real-world settings on a dual-UR5 robot arm setup for Ubuntu 18.04

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Ackermann Line Follower Robot This is a simulation of a line follower robot that works with steering control based on Stanley: The Robot That Won the

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Sampling-Based Motion Planners' Testing Environment Sampling-based motion planners' testing environment (sbp-env) is a full feature framework to quick

CoraNet This is the 3D Implementation of 《Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation》 Environment pytor

MuJoCo Physics MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purpose physics engine that aims to facilitate research and develo

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

Torque Limited Simple Pendulum Introduction The project is an open-source and low-cost kit to get started with underactuated robotics. The kit targets

ANTsPyNet A collection of deep learning architectures and applications ported to the python language and tools for basic medical image processing. Bas

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

A collection of papers about Transformer in the field of medical image analysis.

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

EchoVPR Repo for EchoVPR: Echo State Networks for Visual Place Recognition Currently under development Dirs: data: pre-collected hidden representation

Vision-and-Language Navigation in Continuous Environments (VLN-CE) Project Website — VLN-CE Challenge — RxR-Habitat Challenge Official implementations

Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)

🎓Automatically Update CV Papers Daily using Github Actions (Update at 12:00 UTC Every Day)

Unified Data Collection for Visual-Inertial Calibration via Deep Reinforcement Learning Update: The lastest code will be updated in this branch. Pleas

A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp

SurRoL IROS 2021 SurRoL: An Open-source Reinforcement Learning Centered and dVRK Compatible Platform for Surgical Robot Learning Features dVRK compati

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

linorobot2 is a ROS2 port of the linorobot package. If you're planning to build your own custom ROS2 robot (2WD, 4WD, Mecanum Drive) using accessible parts, then this package is for you. This repository contains launch files to easily integrate your DIY robot with Nav2 and a simulation pipeline to run and verify your experiments on a virtual robot in Gazebo.

CLIPort CLIPort: What and Where Pathways for Robotic Manipulation Mohit Shridhar, Lucas Manuelli, Dieter Fox CoRL 2021 CLIPort is an end-to-end imitat

Semi-supervised-learning-for-medical-image-segmentation. Recently, semi-supervised image segmentation has become a hot topic in medical image computin

Retina Blood Vessels Segmentation This is an implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional

A PyTorch implementation of V-Net Vnet is a PyTorch implementation of the paper V-Net: Fully Convolutional Neural Networks for Volumetric Medical Imag

EfficientSegmentation Introduction EfficientSegmentation is an open source, PyTorch-based segmentation framework for 3D medical image. Features A whol

MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning [MedIA or Arxiv] and [Demo] This repository pr

Certifiable Outlier-Robust Geometric Perception About This repository holds the implementation for certifiably solving outlier-robust geometric percep

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

safe-control-gym Physics-based CartPole and Quadrotor Gym environments (using PyBullet) with symbolic a priori dynamics (using CasADi) for learning-ba

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

Self Driving Car An autonomous car (also known as a driverless car, self-driving car, and robotic car) is a vehicle that is capable of sensing its env

Libraries, tools and tasks created and used at DeepMind Robotics.

THU模式识别2021春 -- Jittor 医学图像分割 模型列表 本仓库收录了课程作业中同学们采用jittor框架实现的如下模型： UNet SegNet DeepLab V2 DANet EANet HarDNet及其改动HarDNet_alter PSPNet OCNet OCRNet DL

CaraNet: Context Axial Reverse Attention Network for Small Medical Objects Segmentation This repository contains the implementation of a novel attenti

CAT-Net: Learning Canonical Appearance Transformations Code to accompany our paper "How to Train a CAT: Learning Canonical Appearance Transformations

Yet Another Robotics and Reinforcement (YARR) learning framework for PyTorch.

Yet Another Robotics and Reinforcement (YARR) learning framework for PyTorch.

Blender Robotics Utils This repository contains utilities for exporting/controlling your robot in Blender Maintainers This repository is maintained by

DiffHand This repository contains the implementation for the paper An End-to-End Differentiable Framework for Contact-Aware Robot Design (RSS 2021). I