Python Protein-structure-prediction Resources

SHGNN: Structure-Aware Heterogeneous Graph Neural Network The source code and dataset of the paper: SHGNN: Structure-Aware Heterogeneous Graph Neural

CONCEPT (COsmological N-body CodE in PyThon) is a free and open-source simulation code for cosmological structure formation. The code should run on any Linux system, from massively parallel computer clusters to laptops.

Semi-supervised Domain Adaptive Structure Learning - ASDA This repo contains the source code and dataset for our ASDA paper. Illustration of the propo

Adaptation through prediction: multisensory active inference torque control Submitted to IEEE Transactions on Cognitive and Developmental Systems Abst

Code data_preprocess.py: preprocess data for Dependent-T5. parameters.py: define parameters of Dependent-T5. train_tools.py: traning and evaluation co

MUC Next Check-ins Prediction via History and Friendship on Location-Based Social Networks (MDM 2018) Performance Details for Accuracy: | Dataset

Context-Aware-Healthcare Codes for AAAI 2022 paper: Context-aware Health Event Prediction via Transition Functions on Dynamic Disease Graphs Download

A JSON-friendly data structure which allows both object attributes and dictionary keys and values to be used simultaneously and interchangeably.

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

WSDM 2022 Large-scale Temporal Graph Link Prediction - Baseline and Initial Test Set WSDM Cup Website link Link to this challenge This branch offers A

Knowledge Graph Embeddings and Chemical Effect Prediction, 2020. Scripts and outputs related to the paper Prediction of Adverse Biological Effects of

AdaConv — Simple TensorFlow Implementation [Paper] : Adaptive Convolutions for Structure-Aware Style Transfer (CVPR 2021) Note This repository does no

SAN Heterogeneous Star Graph Attention Network for Product Attributes Prediction This repository contains the official PyTorch implementation for ADVI

Uni-Fold: Training your own deep protein-folding models. This package provides and implementation of a trainable, Transformer-based deep protein foldi

垃圾分类模型使用说明 1.包含以下数据文件 文件 描述 data/MaterialMapping.csv 物体以及其归类的信息 data/TestRecords 光谱原始测试数据 CSV 文件 data/TestRecordDesc.zip CSV 文件描述文件 data/Boundaries.cs

Temperature Monitoring and Prediction Using a Modified Lambda Architecture A more detailed write up can be seen in this paper. Original Lambda Archite

Pairwise Learning for Neural Link Prediction for OGB (PLNLP-OGB) This repository provides evaluation codes of PLNLP for OGB link property prediction t

JUSTICE: A Benchmark Dataset for Supreme Court’s Judgment Prediction CSCI 544 Final Project done by: Mohammed Alsayed, Shaayan Syed, Mohammad Alali, S

yandex-shifts-weather The repository contains information about my solution for the Weather Prediction track in the Yandex Shifts challenge https://re

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

S-attack library: A library for evaluating trajectory prediction models This library contains two research projects to assess the trajectory predictio

Uni-Fold: Training your own deep protein-folding models. This package provides an implementation of a trainable, Transformer-based deep protein foldin

deepface Deepface is a lightweight face recognition and facial attribute analysis (age, gender, emotion and race) framework for python. It is a hybrid

TensorFlow YOLO object detection on Android Source project android-yolo is the first implementation of YOLO for TensorFlow on an Android device. It is

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

Multi-Person Extreme Motion Prediction Implementation for paper Wen Guo, Xiaoyu Bie, Xavier Alameda-Pineda, Francesc Moreno-Noguer, Multi-Person Extre

SLAMP: Stochastic Latent Appearance and Motion Prediction Official implementation of the paper SLAMP: Stochastic Latent Appearance and Motion Predicti

Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides Project | This repo is the officia

Flask pre-setup architecture. This can be used in any flask project for a faster and better project code structure. All the required libraries are already installed easily to use in any big project.

OnlineSearchRBIS Online Search with Best-Price and Query-Based Predictions This is the implementation of the Robust Binary Interval Search (RBIS) algo

Contra AI Engine A lightweight, production ready Tensorflow alternative developed by Styvio styvio.com » How to Use · Report Bug · Request Feature Tab

AirPollution Pollution Weather Prediction System: Smart Outdoor Pollution Monitoring and Prediction for Healthy Breathing and Living Publication Link:

DenseCLIP: Language-Guided Dense Prediction with Context-Aware Prompting Created by Yongming Rao*, Wenliang Zhao*, Guangyi Chen, Yansong Tang, Zheng Z

This repository contains the code and data for our paper: Editing a classifier by rewriting its prediction rules Shibani Santurkar*, Dimitris Tsipras*

Interchange Intervention Training (IIT) Codebase for Inducing Causal Structure for Interpretable Neural Networks Release Notes 12/01/2021: Code and Pa

My notes on DS and Algo Table of Contents Arrays LinkedList Trees Types of trees: Tree/Graph Traversal Algorithms Heap Priorty Queue Trie Graphs Graph

Semi-supervised Domain Adaptive Structure Learning - ASDA This repo contains the source code and dataset for our ASDA paper. Illustration of the propo

DenseCLIP: Language-Guided Dense Prediction with Context-Aware Prompting Created by Yongming Rao*, Wenliang Zhao*, Guangyi Chen, Yansong Tang, Zheng Z

MoT - Molecular Transformer Large-scale Pretraining for Molecular Property Prediction Samsung AI Challenge for Scientific Discovery This repository is

SIDE: Center-based Stereo 3D Detector with Structure-aware Instance Depth Estimation The source code of our work "SIDE: Center-based Stereo 3D Detecto

SfM disambiguation with COLMAP About Structure-from-Motion generally fails when the scene exhibits symmetries and duplicated structures. In this repos

Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks Requirements python 0.10+ rdkit 2020.03.3.0 biopython 1.78 openbabel 2.4

[NeurIPS 2021 Spotlight] HELP: Hardware-adaptive Efficient Latency Prediction for NAS via Meta-Learning [Paper] This is Official PyTorch implementatio

Data-Minimization-Auditor An auditing tool for model-instability based data minimization that is introduced in "Auditing Black-Box Prediction Models f

Long Expressive Memory for Sequence Modeling This repository contains the implementation to reproduce the numerical experiments of the paper Long Expr

Set of methods to ensemble boxes from different object detection models, including implementation of "Weighted boxes fusion (WBF)" method.

This tool is designed to help administrators get an overview of their Active Directory structure. In the group view you can see all elements of an AD (OU, USER, GROUPS, COMPUTERS etc.). In the user view one sees all users according to their Manager/Manager of Hierarchy.

eCaReNet This code is for eCaReNet: explainable Cancer Relapse Prediction Network. (Towards Explainable End-to-End Prostate Cancer Relapse Prediction

Boston-House-Prediction-Valuation-Tool From Below Anlaysis The Valuation Tool is Designed Correlation Matrix Regrssion Analysis Between Target Vs Pred

an easy and intuitive way to get a quick feel of what’s happening on the world’s market ! Eulera dashboard is a tool allows you to monitor historical

Logistic_Regression_Model A logistic regression model for health insurance purchasing prediction This code is using these packages, so please make sur

GateL0RD This is a lightweight PyTorch implementation of GateL0RD, our RNN presented in "Sparsely Changing Latent States for Prediction and Planning i

Repository containing documentation about the Minecraft Legacy FUI file structure

Linear_Regression_Model A linear regression model for house price prediction. This code is using these packages, so please make sure your have install

LLVM-based compiler for LightGBM gradient-boosted trees. Speeds up prediction by ≥10x.

Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage

DHF1K =========================================================================== Wenguan Wang, J. Shen, M.-M Cheng and A. Borji, Revisiting Video Sal

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv

Unleashing Transformers: Parallel Token Prediction with Discrete Absorbing Diffusion for Fast High-Resolution Image Generation from Vector-Quantized C

Non-Intrusive Speech Intelligibility Prediction from Discrete Latent Representations Official repository for paper "Non-Intrusive Speech Intelligibili

PRIP PRIP：A Protein-RNA Interface Predictor Based on Semantics of Sequences installation gensim==3.8.3 matplotlib==3.1.3 xgboost==1.3.3 prettytable==2

Deep Permutation Equivariant Structure from Motion Paper | Poster This repository contains an implementation for the ICCV 2021 paper Deep Permutation

This repository is the code for NeurIPS 2021 submission "A Surrogate Objective Framework for Prediction+Programming with Soft Constraints". Edit 2021/

Finetune SSL models for MOS prediction This is code for our paper under review for ICASSP 2022: "Generalization Ability of MOS Prediction Networks" Er

trRosetta This package is a part of trRosetta protein structure prediction protocol developed in: Improved protein structure prediction using predicte

COLMAP About COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface.

Aspect Sentiment Quad Prediction (ASQP) This repo contains the annotated data and code for our paper Aspect Sentiment Quad Prediction as Paraphrase Ge

large-scale-ITE-UM-benchmark This repository contains code and data to reproduce the results of the paper "A Large Scale Benchmark for Individual Trea

Geometric Vector Perceptron Implementation of equivariant GVP-GNNs as described in Learning from Protein Structure with Geometric Vector Perceptrons b

AIAlpha: Multilayer neural network architecture for stock return prediction This project is meant to be an advanced implementation of stacked neural n

IntroNeuralNetworks in Python: A Template Project IntroNeuralNetworks is a project that introduces neural networks and illustrates an example of how o

Automated Machine Learning Pipeline for tabular data. Designed for predictive maintenance applications, failure identification, failure prediction, condition monitoring, etc.

Learning Causal Semantic Representation for Out-of-Distribution Prediction This repository is the official implementation of "Learning Causal Semantic

ShallowSeismicImaging Tools to imaging the shallow seismic structure, above 10 km, based on the ZH ratio measured from the ambient seismic noise, and

Do Not Trust Prediction Scores for Membership Inference Attacks Abstract: Membership inference attacks (MIAs) aim to determine whether a specific samp

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

Self-supervised Point Cloud Prediction Using 3D Spatio-temporal Convolutional Networks This is a Pytorch-Lightning implementation of the paper "Self-s

Contrastive Feature Loss for Image Prediction We provide a PyTorch implementation of our contrastive feature loss presented in: Contrastive Feature Lo

TPH-YOLOv5 This repo is the implementation of "TPH-YOLOv5: Improved YOLOv5 Based on Transformer Prediction Head for Object Detection on Drone-Captured

Adversarial Video Generation This project implements a generative adversarial network to predict future frames of video, as detailed in "Deep Multi-Sc

SalGAN: Visual Saliency Prediction with Adversarial Networks Junting Pan Cristian Canton Ferrer Kevin McGuinness Noel O'Connor Jordi Torres Elisa Sayr

MAPIE - Model Agnostic Prediction Interval Estimator MAPIE allows you to easily estimate prediction intervals (or prediction sets) using your favourit

TensorFlow-Time-Series-Examples Additional examples for TensorFlow Time Series(TFTS). Read a Time Series with TFTS From a Numpy Array: See "test_input

Keras implementation of a sequence to sequence model for time series prediction using an encoder-decoder architecture. I created this post to share a

Human Pose Estimation Related Publication

Fast, general, and tested differentiable structured prediction in PyTorch

RATE: Overcoming Noise and Sparsity of Textual Features in Real-Time Location Estimation This is the implementation of RATE: Overcoming Noise and Spar

This is the repository for AIR^2 for Interaction Prediction. Explanation of the solution: Video: link License AIR is released under the Apache 2.0 lic

DeepSTD: Mining Spatio-temporal Disturbances of Multiple Context Factors for Citywide Traffic Flow Prediction This is the implementation of DeepSTD in

Model Serving Made Easy BentoML is a flexible, high-performance framework for serving, managing, and deploying machine learning models. Supports multi

Multipath RefineNet A MATLAB based framework for semantic image segmentation and general dense prediction tasks on images. This is the source code for

Doom o’clock is a website/project that features a countdown of “when will the earth end” and a greenhouse gas effect emission prediction that’s predicted

Stock Price Prediction Bank Jago Using Facebook Prophet Machine Learning & Python Overview Bank Jago has attracted investors' attention since the end

LSTM-Time-Series-Prediction A Simple LSTM-Based Solution for "Heartbeat Signal Classification and Prediction" in Tianchi Contest. The Link of the Cont

AptaMAT Purpose AptaMat is a simple script which aims to measure differences between DNA or RNA secondary structures. The method is based on the compa

kaggle_riiid Transformer part of 12th place solution in Riiid! Answer Correctness Prediction. Please see here for more information. Execution You need

Real-time stock predictions with deep learning and news scraping This repository contains a partial implementation of my bachelor's thesis "Real-time

House-Price-Prediction-Using-Linear-Regression The dataset I used for this personal project is from Kaggle uploaded by aariyan panchal. Link of Datase

PySpark-Bank-Churn Surname: corresponds to the record (row) number and has no effect on the output. CreditScore: contains random values and has no eff

Code for generating alloy / disordered structures through the special quasirandom structure (SQS) algorithm