Python Protein-structure-prediction Resources

Introduction EEGEyeNet EEGEyeNet is a benchmark to evaluate ET prediction based on EEG measurements with an increasing level of difficulty. Overview T

Head-and-Neck-Tumour-Segmentation-and-Prediction-of-Patient-Survival Welcome to the Head and Neck Tumour Segmentation and Prediction of Patient Surviv

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv

AI-UPV at IberLEF-2021 EXIST task: Sexism Prediction in Spanish and English Tweets Using Monolingual and Multilingual BERT and Ensemble Models Descrip

Erosion and dialation using structure element in OpenCV python

Polypharmacy - DDI - Synergy Survey The Survey Paper This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polyp

PhononTools Description Python program to analyze the results generated by phonopy. Using the .yaml and .dat files that phonopy generates one can plot

This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.

Introduction orfipy is a tool written in python/cython to extract ORFs in an extremely and fast and flexible manner. Other popular ORF searching tools

Python Orbit Ephemeris Message tools Python tools for working with Orbit Ephemeris Messages (OEMs). Development Status Installation The oem package is

ICCV 2021: Where are you heading? Dynamic Trajectory Prediction with Expert Goal Examples This repository contains the code for the paper Where are yo

Safety-aware Motion Prediction with Unseen Vehicles for Autonomous Driving Safety-aware Motion Prediction with Unseen Vehicles for Autonomous Driving

MG-GAN: A Multi-Generator Model Preventing Out-of-Distribution Samples in Pedestrian Trajectory Prediction This repository contains the code for the p

Personalized Trajectory Prediction via Distribution Discrimination (DisDis) The official PyTorch code implementation of "Personalized Trajectory Predi

Human Trajectory Prediction via Counterfactual Analysis (CausalHTP) The official PyTorch code implementation of "Human Trajectory Prediction via Count

FaPN: Feature-aligned Pyramid Network for Dense Image Prediction [arXiv] [Project Page] @inproceedings{ huang2021fapn, title={{FaPN}: Feature-alig

Cryptocurrency price prediction and exceptions in python This is a coursework on foundations of computing module Through this coursework i worked on m

MARLITE Shiny app for floating marine litter detection in aerial images. This directory contains the instructions and software needed to install the S

Introduce QML-like declarative structure to Python world. Developer writes only pure Python code for QML.

Semisupervised Multitask Learning This repository is an unofficial and slightly modified implementation of UM-Adapt[1] using PyTorch. This code primar

Explore RNA-Protein interactions. RNPFind is a bioinformatics tool. It takes an RNA transcript as input and gives a list of RNA binding protein (RBP)

Polypharmacy - DDI - Synergy Survey The Survey Paper This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polyp

Stochastic Scene-Aware Motion Prediction [Project Page] [Paper] Description This repository contains the training code for MotionNet and GoalNet of SA

CFN-SR A CROSS-MODAL FUSION NETWORK BASED ON SELF-ATTENTION AND RESIDUAL STRUCTURE FOR MULTIMODAL EMOTION RECOGNITION The audio-video based multimodal

ConstDict python代替的Dict数据结构 若字典不会增加字段，只读/原字段修改 使用ConstDict可节省内存 Dict()内存主要消耗的地方： 1、Dict扩容机制，预留内存空间 2、Dict也是一个对象，内部会动态维护__dict__，增加slot类属性可以节省内容 节省内存大小

PECOS - Predictions for Enormous and Correlated Output Spaces PECOS is a versatile and modular machine learning (ML) framework for fast learning and i

Personal thermal comfort models using digital twins: Preference prediction with BIM-extracted spatial-temporal proximity data from Build2Vec This repo

Structure Information is the Key: Self-Attention RoI Feature Extractor in 3D Object Detection abstract:Unlike 2D object detection where all RoI featur

DSP: Trajectory Prediction with Graph-based Dual-scale Context Fusion Introduction This is the project page of the paper Lu Zhang, Peiliang Li, Jing C

Next Word Prediction Keywords : Streamlit, BertTokenizer, BertForMaskedLM, Pytorch 🎬 Project Demo ✔ Application is hosted on Streamlit. You can see t

Python Example Project Structure Example of statuses that can be in readme: Visit my docs for the full documentation, examples and guides. With this p

Predicitng_viability Using Streamlit to host a multi-page tool with model specs and classification metrics, while also accepting user input values for

DataStructure Journey This repo represents all we learned and are learning in Data Structure course which is based on CLRS book and is being taught by

Lossy Compression for Lossless Prediction Using: Training: This repostiory contains our implementation of the paper: Lossy Compression for Lossless Pr

MISA Abstract Generalization across environments is critical to the successful application of reinforcement learning algorithms to real-world challeng

What is liGAN? liGAN is a research codebase for training and evaluating deep generative models for de novo drug design based on 3D atomic density grid

Using Time-Series Privileged Information for Provably Efficient Learning of Prediction Models Link to paper Abstract We study prediction of future out

Predicting lncRNA–protein interactions based on graph autoencoders and collaborative training Code for our paper "Predicting lncRNA–protein interactio

Abstract Every year, floods cause billions of dollars’ worth of damages to life, crops, and property. With a proper early flood warning system in plac

Fastapi + MLflow + streamlit Setup env. I hope I covered all. pip install -r requirements.txt Start app Go in the root dir and run these Streamlit str

Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder structure with deep supervision (—𝘜𝘕𝘦𝘵++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.

Exploiting the Intrinsic Neighborhood Structure for Source-free Domain Adaptation (NeurIPS 2021) Code for our NeurIPS 2021 paper 'Exploiting the Intri

vs-parsedvd DVDs were an error. A wrapper for DVD file structure and ISO files. You can find me in the IEW Discord server

Physion: Evaluating Physical Prediction from Vision in Humans and Machines This repo contains code and data to reproduce the results in our paper, Phy

Web app to predict closing stock prices in real time using Facebook's Prophet time series algorithm with a multi-variate, single-step time series forecasting strategy.

Unit Testing Interactions with Amazon Web Services (AWS) Unit testing AWS interactions with pytest and moto. These examples demonstrate how to structu

Offline Reverse Image Search Overview This app finds duplicate to near duplicate images by generating a hash value for each image stored with a specia

LDNet Author: Wen-Chin Huang (Nagoya University) Email: [email protected] This is the official implementation of the paper "LDNet

Hand-Object Contact Prediction (BMVC2021) This repository contains the code and data for the paper "Hand-Object Contact Prediction via Motion-Based Ps

feature-set-comp Compares various time-series feature sets on computational performance, within-set structure, and between-set relationships. Reposito

Permeability-Prediction-Via-Multi-Scale-3D-CNN Data: The raw CT rock cores are obtained from the Imperial Colloge portal. The CT rock cores are sub-sa

peptides.py Physicochemical properties and indices for amino-acid sequences. 🗺️ Overview peptides.py is a pure-Python package to compute common descr

Parameter Prediction for Unseen Deep Architectures (NeurIPS 2021) authors: Boris Knyazev, Michal Drozdzal, Graham Taylor, Adriana Romero-Soriano Overv

PyTorch implementation of the paper Ultra Fast Structure-aware Deep Lane Detection

Price Prediction with Recurrent Neural Networks LSTMs BTC-USD price prediction with deep learning algorithm. Artificial Neural Networks specifically L

Rethinking Transformer-based Set Prediction for Object Detection Here are the code for the ICCV paper. The code is adapted from Detectron2 and AdelaiD

Pixel-Perfect Structure-from-Motion (ICCV 2021 Oral) We introduce a framework that improves the accuracy of Structure-from-Motion by refining keypoint

[NeurIPS 2021 Spotlight] HELP: Hardware-adaptive Efficient Latency Prediction for NAS via Meta-Learning [Paper] This is Official PyTorch implementatio

PG2Net PG2Net:Personalized and Group Preference Guided Network for Next Place Prediction Datasets Experiment results on two Foursquare check-in datase

Understanding the network formation pattern for better link prediction Authors: [email protected] [email protected] Overview: Link prediction using M

Simultaneous Demand Prediction and Planning Dependencies Python packages: Pytorch, scikit-learn, Pandas, Numpy, PyYAML Data POI: data/poi Road network

LDNet Author: Wen-Chin Huang (Nagoya University) Email: [email protected] This is the official implementation of the paper "LDNet

Graph2SMILES A graph-to-sequence model for one-step retrosynthesis and reaction outcome prediction. 1. Environmental setup System requirements Ubuntu:

HF2-VAD Offcial implementation of "A Hybrid Video Anomaly Detection Framework via Memory-Augmented Flow Reconstruction and Flow-Guided Frame Predictio

Wafer Fault Detection using MlOps Integration This is an end to end machine learning project with MlOps integration for predicting the quality of wafe

Diabetes Prediction with Logistic Regression Exploratory Data Analysis Data Preprocessing Model & Prediction Model Evaluation Model Validation: Holdou

DMBGN: Deep Multi-Behaviors Graph Networks for Voucher Redemption Rate Prediction The implementation of the accepted paper "Deep Multi-Behaviors Graph

MGNN-SPred This is our Tensorflow implementation for the paper: WenWang,Wei Zhang, Shukai Liu, Qi Liu, Bo Zhang, Leyu Lin, and Hongyuan Zha. 2020. Bey

SPDNet Structure-Preserving Deraining with Residue Channel Prior Guidance (ICCV2021) Requirements Linux Platform NVIDIA GPU + CUDA CuDNN PyTorch == 0.

Paint Transformer: Feed Forward Neural Painting with Stroke Prediction [Paper] [Official Paddle Implementation] [Huggingface Gradio Demo] [Unofficial

Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage

Salary-Prediction-with-Machine-Learning 1. Business Problem Can a machine learning project be implemented to estimate the salaries of baseball players

Non-Autoregressive Translation with Layer-Wise Prediction and Deep Supervision Training Efficiency We show the training efficiency of our DSLP model b

tetrados tetrados is a tool to generate a density of states using the linear tetrahedron method from a band structure. Currently, only VASP calculatio

Rethinking Transformer-based Set Prediction for Object Detection Here are the code for the ICCV paper. The code is adapted from Detectron2 and AdelaiD

Non-Autoregressive Translation with Layer-Wise Prediction and Deep Supervision Training Efficiency We show the training efficiency of our DSLP model b

Companion code for "Bayesian logistic regression for online recalibration and revision of risk prediction models with performance guarantees" Installa

Variational Graph Auto-encoder in Pytorch This repository implements variational graph auto-encoder by Thomas Kipf. For details of the model, refer to

Motif-based Graph Self-Supervised Learning for Molecular Property Prediction Official Pytorch implementation of NeurIPS'21 paper "Motif-based Graph Se

SGNet Project for the IJCAI 2021 paper "Structure Guided Lane Detection" Abstract Recently, lane detection has made great progress with the rapid deve

Bangalore-House-Price-Prediction An end-to-end regression problem of predicting the price of properties in Bangalore. Deployed in Heroku using Flask.

Python example making use of best practice file structure and multithreading.

[ICCV'2021] Image Inpainting via Conditional Texture and Structure Dual Generation

Relation Prediction as an Auxiliary Training Objective for Knowledge Base Completion This repo provides the code for the paper Relation Prediction as

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A simple tool that updates your pubspec.yaml file, of a Flutter project, without altering the structure of your file.

Video Autoencoder: self-supervised disentanglement of 3D structure and motion This repository contains the code (in PyTorch) for the model introduced

Telco Customer Churn Prediction - Plotly Dash Application Description This dash application allows you to predict telco customer churn using machine l

Adaptive Task-Relational Context (ATRC) This repository provides source code for the ICCV 2021 paper Exploring Relational Context for Multi-Task Dense

VectorNet Re-implementation This is the unofficial pytorch implementation of CVPR2020 paper "VectorNet: Encoding HD Maps and Agent Dynamics from Vecto

RealTime Sign Language Detection using Action Recognition Approach Real-Time Sign Language is commonly predicted using models whose architecture consi

Table of Contents: Introduction to Torch's Tensor Library Computation Graphs and Automatic Differentiation Deep Learning Building Blocks: Affine maps,

FIDNet_SemanticKITTI Motivation Implementing complicated network modules with only one or two points improvement on hardware is tedious. So here we pr

This is a fork of Fairseq(-py) with implementations of the following models: Pervasive Attention - 2D Convolutional Neural Networks for Sequence-to-Se

Implementation of Deep-Forecast using PyTorch Deep Forecast: Deep Learning-based Spatio-Temporal Forecasting Adapted from original implementation Setu

RGN2-Replica (WIP) To eventually become an unofficial working Pytorch implementation of RGN2, an state of the art model for MSA-less Protein Folding f

FaPN: Feature-aligned Pyramid Network for Dense Image Prediction [arXiv] [Project Page] @inproceedings{ huang2021fapn, title={{FaPN}: Feature-alig

Compositionally Generalizable 3D Structure Prediction In this work, We bring in the concept of compositional generalizability and factorizes the 3D sh

Recommended AWS CDK project structure for Python applications The project implements a user management backend component that uses Amazon API Gateway,