Python Single-cell-rna-seq Resources

Towards Robust Monocular Depth Estimation: Mixing Datasets for Zero-shot Cross-dataset Transfer This repository contains code to compute depth from a

SST: Single-stride Sparse Transformer This is the official implementation of paper: Embracing Single Stride 3D Object Detector with Sparse Transformer

Light Field Networks Project Page | Paper | Data | Pretrained Models Vincent Sitzmann*, Semon Rezchikov*, William Freeman, Joshua Tenenbaum, Frédo Dur

SST: Single-stride Sparse Transformer This is the official implementation of paper: Embracing Single Stride 3D Object Detector with Sparse Transformer

DRSAN A Dynamic Residual Self-Attention Network for Lightweight Single Image Super-Resolution Karam Park, Jae Woong Soh, and Nam Ik Cho Environments U

ScisorWiz: Vizualizer for Differential Isoform Expression README ScisorWiz is a linux-based R-package for visualizing differential isoform expression

TIBCO ActiveMatrix™ BusinessWorks 6.8 Docker Image Image for running a complete single-node all-in-one cluster instance of TIBCO ActiveMatrix™ Busines

unitcell Python script to generate vector graphics of an oriented lattice unit cell Examples unitcell --type hexagonal --eulers 12 23 34 --axes --crys

A Strong Single-Stage Baseline for Long-Tailed Problems This project provides a strong single-stage baseline for Long-Tailed Classification (under Ima

graceful-killer An extremely simple package with a single utillity class used for gracefully handling POSIX shutdown signals. Installation Use pip to

Easy and secure implementation of Azure AD for your FastAPI APIs 🔒 Single- and multi-tenant support.

PyCellID (building...) Functions to analyze Cell-ID single-cell cytometry data using python language. Dependecies for this project. attrs(=21.1.0) fo

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

django-usso Ugly single sign-on for django projects only. Do you have many django apps with different users? Do you want to use only one of those apps

Deep Residual Fourier Transformation for Single Image Deblurring Xintian Mao, Yiming Liu, Wei Shen, Qingli Li and Yan Wang News 2021.12.5 Release Deep

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

CLIPstyler Official Pytorch implementation of "CLIPstyler:Image Style Transfer with a Single Text Condition" Environment Pytorch 1.7.1, Python 3.6 $ c

Single-Stage Instance Shadow Detection with Bidirectional Relation Learning (CVPR 2021 Oral) Tianyu Wang*, Xiaowei Hu*, Chi-Wing Fu, and Pheng-Ann Hen

A single model that parses Universal Dependencies across 75 languages. Given a sentence, jointly predicts part-of-speech tags, morphology tags, lemmas, and dependency trees.

Gradient Cached Dense Passage Retrieval Gradient Cached Dense Passage Retrieval (GC-DPR) - is an extension of the original DPR library. We introduce G

MonoScene: Monocular 3D Semantic Scene Completion MonoScene: Monocular 3D Semantic Scene Completion] [arXiv + supp] | [Project page] Anh-Quan Cao, Rao

CLIPstyler Official Pytorch implementation of "CLIPstyler:Image Style Transfer with a Single Text Condition" Environment Pytorch 1.7.1, Python 3.6 $ c

The Stem Cell Hypothesis Codes for our paper The Stem Cell Hypothesis: Dilemma behind Multi-Task Learning with Transformer Encoders published to EMNLP

Multipath-Load-Balancing Method of managing incoming traffic by distributing and sharing load fairly among multiple routes from source to destination

dispersion-score Official implementation of 3DV 2021 Paper A Dataset-dispersion Perspective on Reconstruction versus Recognition in Single-view 3D Rec

Estimating Multi-cause Treatment Effects via Single-cause Perturbation (NeurIPS 2021) Single-cause Perturbation (SCP) is a framework to estimate the m

pysot-toolkit The purpose of this repo is to provide evaluation API of Current Single Object Tracking Dataset, including VOT2016 VOT2018 VOT2018-LT OT

NTIRE2017 Super-resolution Challenge: SNU_CVLab Introduction This is our project repository for CVPR 2017 Workshop (2nd NTIRE). We, Team SNU_CVLab, (B

Subspace Adversarial Training Single-step adversarial training (AT) has received wide attention as it proved to be both efficient and robust. However,

SinGAN Project | Arxiv | CVF | Supplementary materials | Talk (ICCV`19) Official pytorch implementation of the paper: "SinGAN: Learning a Generative M

SSC-GAN_repo Pytorch implementation for 'Semi-Supervised Single-Stage Controllable GANs for Conditional Fine-Grained Image Generation'.PDF SSC-GAN:Sem

A Python API for Intelligent Visual Discovery Lux is a Python library that facilitate fast and easy data exploration by automating the visualization a

PySlayer An single python server emulator of MMORPG game WindSlayer also known as WS1. Requirements Python = 3.7 Old windslayer client (Korea Yahoo!

Pruning Self-attentions into Convolutional Layers in Single Path This is the official repository for our paper: Pruning Self-attentions into Convoluti

Deep Residual Fourier Transformation for Single Image Deblurring Xintian Mao, Yiming Liu, Wei Shen, Qingli Li and Yan Wang code will be released soon

PRIP PRIP：A Protein-RNA Interface Predictor Based on Semantics of Sequences installation gensim==3.8.3 matplotlib==3.1.3 xgboost==1.3.3 prettytable==2

English | 简体中文 Documentation: https://mmtracking.readthedocs.io/ Introduction MMTracking is an open source video perception toolbox based on PyTorch.

Minimal Hand A minimal solution to hand motion capture from a single color camera at over 100fps. Easy to use, plug to run. This project provides the

Pruning Self-attentions into Convolutional Layers in Single Path This is the official repository for our paper: Pruning Self-attentions into Convoluti

A synchronous, single-threaded interface for starting processes on Linux

Expressive Body Capture: 3D Hands, Face, and Body from a Single Image [Project Page] [Paper] [Supp. Mat.] Table of Contents License Description Fittin

Scanpy – Single-Cell Analysis in Python Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It inc

'db' within pydantic - A single model for shaping, creating, accessing, storing data within a Database Key Features Integrated Redis Caching Support A

Scripts for "Current best-practices in single-cell RNA-seq: a tutorial" This repository is complementary to the publication: M.D. Luecken, F.J. Theis,

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

CleanRL (Clean Implementation of RL Algorithms) CleanRL is a Deep Reinforcement Learning library that provides high-quality single-file implementation

TraSw for FairMOT A Single-Target Attack example (Attack ID: 19; Screener ID: 24): Fig.1 Original Fig.2 Attacked By perturbing only two frames in this

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

Restormer: Efficient Transformer for High-Resolution Image Restoration Syed Waqas Zamir, Aditya Arora, Salman Khan, Munawar Hayat, Fahad Shahbaz Khan,

Minimal Body A very simple baseline to estimate 2D & 3D SMPL-compatible keypoints from a single color image. The model file is only 51.2 MB and runs a

3D Object Reconstruction from a Single Depth View with Adversarial Learning Bo Yang, Hongkai Wen, Sen Wang, Ronald Clark, Andrew Markham, Niki Trigoni

3D-R2N2: 3D Recurrent Reconstruction Neural Network This repository contains the source codes for the paper Choy et al., 3D-R2N2: A Unified Approach f

Photo-Realistic-Super-Resoluton Torch Implementation of "Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network" [Paper]

PhenoGraph for Python3 PhenoGraph is a clustering method designed for high-dimensional single-cell data. It works by creating a graph ("network") repr

Keras implementation of a sequence to sequence model for time series prediction using an encoder-decoder architecture. I created this post to share a

CenterPose Overview This repository is the official implementation of the paper "Single-stage Keypoint-based Category-level Object Pose Estimation fro

StableLLVE This is a Pytorch implementation of "Learning Temporal Consistency for Low Light Video Enhancement from Single Images" in CVPR 2021, by Fan

PythonImage2PDF A simple Python script to convert multiple images into a single PDF-document. Created basically for only my own needs for converting m

EZ-Graph EZ Graph is a GUI that allows users to make and train neural networks without writing a single line of code. Requirements python 3 pandas num

AlbUNet-1D-2D-Tensorflow-Keras This repository contains 1D and 2D Signal Segmentation Model Builder for AlbUNet and several of its variants developed

quick_eda Receiving dataframe statistics with one command Project description A python package for Data Scientists, Students, ML Engineers and anyone

Template Script Category Description Category script comparison script train.py, loader.py for single-machine-multiple-cards training train_DP.py, tra

E-Shelter Excel2QR Reads Data from given Excel File and exports Single PDFs and a complete PDF grouped by Gateway Features Reads Excel 2021 Export Sin

SkeletonNet This repository constains the codes and ShapeNetV1-Surface-Skeleton,ShapNetV1-SkeletalVolume and 2d image datasets ShapeNetRendering. Plea

AptaMAT Purpose AptaMat is a simple script which aims to measure differences between DNA or RNA secondary structures. The method is based on the compa

A Python adaption of Augur to prioritize cell types in perturbation analysis.

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

Photon-Starved Scene Inference using Single Photon Cameras ICCV 2021 Arxiv Project Video Bhavya Goyal, Mohit Gupta University of Wisconsin-Madison Abs

Single/Multiple Object Tracking and Segmentation Codes and comparison of recent single/multiple object tracking and segmentation. News 💥 AutoMatch is

Explore RNA-Protein interactions. RNPFind is a bioinformatics tool. It takes an RNA transcript as input and gives a list of RNA binding protein (RBP)

Placeholder Placeholders is a single-unit file storage solution for your Frontend. Why Placeholder? Generally, when a website/service requests for fil

Install vintools To download this package from pypi: pip install vintools Install the development package To download and install the developmen

Map single-cell transcriptomes to copy number evolutionary trees. Check out the tutorial for more information. Installation $ pip install scatrex SCA

ToeholdTools Category Status Repository Package Build Quality A library for the analysis of toehold switch riboregulators created by the iGEM team Cit

WarGame-third-version-0.0.4- 2d war game single player Hi ! Today, I publish on GitHub the version 0.0.4 of "WarGame". In this version, you can find a

Simple web application, which has a single endpoint, dedicated to annotation parsing and conversion.

Interacting Two-Hand 3D Pose and Shape Reconstruction from Single Color Image Interacting Two-Hand 3D Pose and Shape Reconstruction from Single Color

Identicons What are identicons? Setup: git clone https://github.com/vjdad4m/identicons.git cd identicons pip3 install -r requirements.txt chmod +x

Deep Illuminator Deep Illuminator is a data augmentation tool designed for image relighting. It can be used to easily and efficiently generate a wide

Deep-FIR Codebase - Super Resolution Meta Attention Networks About This repository contains the main coding framework accompanying our work on meta-at

pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image

Wagtail Live Gitpod Launch a ready-to-code Wagtail Live development environment with a single click. Steps: Click the Open in Gitpod button. Relax: a

WA Terminal is a CLI application that allows us to login and send message with WhatsApp with a single command.

single_snake_sequencing - sc/snRNAseq Snakemake Workflow A Snakemake workflow for standardised sc/snRNAseq analysis. Every single cell analysis is sli

Auto-Research A no-code utility to generate a detailed well-cited survey with topic clustered sections (draft paper format) and other interesting arti

CvT-ASSD including extra CvT, CvT-SSD, VGG-ASSD models original-code-website: https://github.com/albert-jin/CvT-SSD new-code-website: https://github.c

On Path Integration of Grid Cells: Group Representation and Isotropic Scaling This repo contains the official implementation for the paper On Path Int

A totally unrealistic cell growth/reproduction simulation.

datascienv is package that helps your to setup your environment in single line of code with all dependency and it is also include pyforest that provide single line of import all required ml libraries

Trash or Treasure? An Interactive Dual-Stream Strategy for Single Image Reflection Separation (NeurIPS 2021) by Qiming Hu, Xiaojie Guo. Dependencies P

Kaggle: Cell Instance Segmentation The goal of this challenge is to detect cells in microscope images. with simple view on how many cels have been ann

ZigStar GW Multi tool is GUI wrapper firtsly designed for convenient service work with Zig Star LAN GW, but now supports any TI CC1352/CC2538/CC2652 b

AMAZ3DSim AMAZ3DSim is a lightweight python-based 3D network multi-agent simulator. It uses a cell-based congestion model. It calculates risk, battery

In-the-Wild Single Camera 3D Reconstruction Through Moving Water Surfaces This is the PyTorch implementation for 2021 ICCV paper "In-the-Wild Single C

AutoFlask-Setup About AutoFlask-Setup can help you set up a new Flask Project, right from creating virtual environment to creating Procfile for deploy

Trash or Treasure? An Interactive Dual-Stream Strategy for Single Image Reflection Separation (NeurIPS 2021) by Qiming Hu, Xiaojie Guo. Dependencies P

FaPro Free,Cross-platform,Single-file mass network protocol server simulator 中文Readme Description FaPro is a Fake Protocol Server tool, Can easily sta

3d-ken-burns This is a reference implementation of 3D Ken Burns Effect from a Single Image [1] using PyTorch. Given a single input image, it animates

QuakeLabeler Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently bu

starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics