Python 3d-medical-imaging-segmentation Resources

FactSeg: Foreground Activation Driven Small Object Semantic Segmentation in Large-Scale Remote Sensing Imagery by Ailong Ma, Junjue Wang*, Yanfei Zhon

Paper | YouTube | Cityscapes Score Pytorch implementation of our paper Hierarchical Multi-Scale Attention for Semantic Segmentation. Please refer to t

LiDAR-MOS: Moving Object Segmentation in 3D LiDAR Data This repo contains the code for our paper: Moving Object Segmentation in 3D LiDAR Data: A Learn

Bidirectional Projection Network for Cross Dimension Scene Understanding CVPR 2021 (Oral) [ Project Webpage ] [ arXiv ] [ Video ] Existing segmentatio

HPNet This repository contains the PyTorch implementation of paper: HPNet: Deep Primitive Segmentation Using Hybrid Representations. Installation The

MaskFormer: Per-Pixel Classification is Not All You Need for Semantic Segmentation Bowen Cheng, Alexander G. Schwing, Alexander Kirillov [arXiv] [Proj

A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography

CARscan- Approach 1 - Segmentation of images by detecting contours. It failed because in images with elements along with cars were also getting detect

1st place solution to the Satellite Image Change Detection Challenge hosted by SenseTime

NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat

U-Net for brain segmentation U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI based on a deep learning segmentation alg

STEAL This is the official inference code for: Devil Is in the Edges: Learning Semantic Boundaries from Noisy Annotations David Acuna, Amlan Kar, Sanj

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

Adaptive Segmentation Mask Attack This repository contains the implementation of the Adaptive Segmentation Mask Attack (ASMA), a targeted adversarial

Seg_Uncertainty In this repo, we provide the code for the two papers, i.e., MRNet：Unsupervised Scene Adaptation with Memory Regularization in vivo, IJ

UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

UACANet: Uncertainty Aware Context Attention for Polyp Segmentation Official pytorch implementation of UACANet: Uncertainty Aware Context Attention fo

MONAI Label is a server-client system that facilitates interactive medical image annotation by using AI. It is an open-source and easy-to-install ecosystem that can run locally on a machine with one or two GPUs. Both server and client work on the same/different machine. However, initial support for multiple users is restricted. It shares the same principles with MONAI.

Deep Dual-resolution Networks for Real-time and Accurate Semantic Segmentation of Road Scenes Introduction This is the unofficial code of Deep Dual-re

2021-MICCAI-Progressively Normalized Self-Attention Network for Video Polyp Segmentation Authors: Ge-Peng Ji*, Yu-Cheng Chou*, Deng-Ping Fan, Geng Che

SCL Introduction Code for 'Self-Guided and Cross-Guided Learning for Few-shot segmentation. (CVPR' 2021)' We evaluated our approach using two baseline

Semantic Segmentation for Real Point Cloud Scenes via Bilateral Augmentation and Adaptive Fusion (CVPR 2021) This repository is for BAAF-Net introduce

Multi YOLO V5——Detection and Semantic Segmentation Overeview This is my undergraduate graduation project which based on ultralytics YOLO V5 tag v5.0.

Data Efficient Stagewise Knowledge Distillation Table of Contents Data Efficient Stagewise Knowledge Distillation Table of Contents Requirements Image

README clDice - a Novel Topology-Preserving Loss Function for Tubular Structure Segmentation CVPR 2021 Authors: Suprosanna Shit and Johannes C. Paetzo

Point Cloud Denoising input segmentation output raw point-cloud valid/clear fog rain de-noised Abstract Lidar sensors are frequently used in environme

Rethinking Text Segmentation: A Novel Dataset and A Text-Specific Refinement Approach This is the repo to host the dataset TextSeg and code for TexRNe

Generic Event Boundary Detection: A Benchmark for Event Segmentation We release our data annotation & baseline codes for detecting generic event bound

PyMedPhys is an open-source Medical Physics python library built by an open community that values and prioritises code sharing, review, improvement, and learning from each other. I

U Net Lowered with Keras Complete U-net Implementation with keras Original Paper Link : https://arxiv.org/abs/1505.04597 Special Implementations : The

Swin-Unet The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"(https://arxiv.org/abs/2105.05537). A validatio

What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi

Unsupervised Learning for Cuboid Shape Abstraction via Joint Segmentation from Point Clouds This repository is a PyTorch implementation for paper: Uns

DANNet: A One-Stage Domain Adaptation Network for Unsupervised Nighttime Semantic Segmentation CVPR2021(oral) [arxiv] Requirements python3.7 pytorch==

BRepNet: A topological message passing system for solid models This repository contains the an implementation of BRepNet: A topological message passin

Robust Instance Segmentation through Reasoning about Multi-Object Occlusion [CVPR 2021] Abstract Analyzing complex scenes with DNN is a challenging ta

PiCIE: Unsupervised Semantic Segmentation using Invariance and Equivariance in Clustering Jang Hyun Cho1, Utkarsh Mall2, Kavita Bala2, Bharath Harihar

One Thing One Click One Thing One Click: A Self-Training Approach for Weakly Supervised 3D Semantic Segmentation (CVPR2021) Code for the paper One Thi

OrienMask This repository implements the framework OrienMask for real-time instance segmentation. It achieves 34.8 mask AP on COCO test-dev at the spe

Segmentation and Identification of Vertebrae in CT Scans using CNN, k-means Clustering and k-NN If you use this code for your research, please cite ou

Polygonal Building Segmentation by Frame Field Learning We add a frame field output to an image segmentation neural network to improve segmentation qu

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus General info This is

Uformer - Pytorch Implementation of Uformer, Attention-based Unet, in Pytorch. It will only offer the concat-cross-skip connection. This repository wi

sAP — Code for Towards Streaming Perception ECCV Best Paper Honorable Mention Award Feb 2021: Announcing the Streaming Perception Challenge (CVPR 2021

SegFormer: Simple and Efficient Design for Semantic Segmentation with Transformers Figure 1: Performance of SegFormer-B0 to SegFormer-B5. Project page

FANet Real-time Semantic Segmentation with Fast Attention Ping Hu, Federico Perazzi, Fabian Caba Heilbron, Oliver Wang, Zhe Lin, Kate Saenko , Stan Sc

SingleClassRL Implementation of weak single object segmentation from paper "Regularized Loss for Weakly Supervised Single Class Semantic Segmentation"

ASGNet The code is for the paper "Adaptive Prototype Learning and Allocation for Few-Shot Segmentation" (accepted to CVPR 2021) [arxiv] Overview data/

Aerial Imagery dataset for fire detection: classification and segmentation using Unmanned Aerial Vehicle (UAV) Title FLAME (Fire Luminosity Airborne-b

Segformer - Pytorch Implementation of Segformer, Attention + MLP neural network for segmentation, in Pytorch. Install $ pip install segformer-pytorch

STCN Rethinking Space-Time Networks with Improved Memory Coverage for Efficient Video Object Segmentation Ho Kei Cheng, Yu-Wing Tai, Chi-Keung Tang [a

SOLQ: Segmenting Objects by Learning Queries This repository is an official implementation of the paper SOLQ: Segmenting Objects by Learning Queries.

README This is the official Pytorch implementation of "Lung Segmentation from Chest X-rays using Variational Data Imputation", Raghavendra Selvan et a

Prior-Enhanced network with Meta-Prototypes (PEMP) This is the PyTorch implementation of PEMP. Overview of PEMP Meta-Prototypes & Adaptive Prototypes

TorchSemiSeg [CVPR 2021] Semi-Supervised Semantic Segmentation with Cross Pseudo Supervision by Xiaokang Chen1, Yuhui Yuan2, Gang Zeng1, Jingdong Wang

Ozeu Ozeu is the toolkit to autolabal dataset for instance segmentation. You can generate datasets labaled with segmentation mask and bounding box fro

Continual Semantic Segmentation via Repulsion-Attraction of Sparse and Disentangled Latent Representations This is the official PyTorch implementation

A PyTorch impl of EfficientDet faithful to the original Google impl w/ ported weights

Clairvoyance: A Pipeline Toolkit for Medical Time Series Authors: van der Schaar Lab This repository contains implementations of Clairvoyance: A Pipel

Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing This repository contains pytorch source code for AAAI2020 oral paper: Grapy-ML

Medical Image Segmentation using Squeeze-and-Expansion Transformers Introduction This repository contains the code of the IJCAI'2021 paper 'Medical Im

SalsaNext: Fast, Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving Abstract In this paper, we introduce SalsaNext f

Self-Supervised-MVS This repository is the official PyTorch implementation of our AAAI 2021 paper: "Self-supervised Multi-view Stereo via Effective Co

Look Closer to Segment Better: Boundary Patch Refinement for Instance Segmentation (CVPR 2021) Introduction PBR is a conceptually simple yet effective

PI-DECODER Introduction PI-DECODER, a decoder structure designed for Precise Iris Segmentation and Location. The decoder structure is shown below: Ple

Semi-supervised Semantic Segmentation with Directional Context-aware Consistency (CAC) Xin Lai*, Zhuotao Tian*, Li Jiang, Shu Liu, Hengshuang Zhao, Li

Gradient-Induced Co-Saliency Detection Zhao Zhang*, Wenda Jin*, Jun Xu, Ming-Ming Cheng ⭐ Project Home » The official repo of the ECCV 2020 paper Grad

When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi

Finding an Unsupervised Image Segmenter in each of your Deep Generative Models Description Recent research has shown that numerous human-interpretable

EOPSN: Exemplar-Based Open-Set Panoptic Segmentation Network (CVPR 2021) PyTorch implementation for EOPSN. We propose open-set panoptic segmentation t

Table of Content Introduction Datasets Getting Started Requirements Usage Example Training & Evaluation CPM: Color-Pattern Makeup Transfer CPM is a ho

CMPC-Refseg Code of our CVPR 2020 paper Referring Image Segmentation via Cross-Modal Progressive Comprehension. Shaofei Huang*, Tianrui Hui*, Si Liu,

DCT-Mask: Discrete Cosine Transform Mask Representation for Instance Segmentation This project hosts the code for implementing the DCT-MASK algorithms

PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.

Segmenter - Transformer for Semantic Segmentation

ViT-V-Net: Vision Transformer for Volumetric Medical Image Registration keywords: vision transformer, convolutional neural networks, image registratio

Self-supervised Augmentation Consistency for Adapting Semantic Segmentation This repository contains the official implementation of our paper: Self-su

A curated list of awesome anomaly detection works in medical imaging, inspired by the other awesome-* initiatives.

QueryInst is a simple and effective query based instance segmentation method driven by parallel supervision on dynamic mask heads, which outperforms previous arts in terms of both accuracy and speed.

CorDA Code for our paper Domain Adaptive Semantic Segmentation with Self-Supervised Depth Estimation Prerequisite Please create and activate the follo

Code for CVPR2021 paper Zero-shot Instance Segmentation Code requirements python: python3.7 nvidia GPU pytorch1.1.0 GCC =5.4 NCCL 2 the other python

Auto-Seg-Loss By Hao Li, Chenxin Tao, Xizhou Zhu, Xiaogang Wang, Gao Huang, Jifeng Dai This is the official implementation of the ICLR 2021 paper Auto

Transparent Transformer Segmentation Introduction This repository contains the data and code for IJCAI 2021 paper Segmenting transparent object in the

RDPNet IEEE TIP 2021: Regularized Densely-connected Pyramid Network for Salient Instance Segmentation PyTorch training and testing code are available.

This is the project page for the paper: ISTR: End-to-End Instance Segmentation via Transformers, Jie Hu, Liujuan Cao, Yao Lu, ShengChuan Zhang, Yan Wa

Anti-Adversarially Manipulated Attributions for Weakly and Semi-Supervised Semantic Segmentation Input Image Initial CAM Successive Maps with adversar

The trained models are temporarily unavailable, but you can train the code using reasonable computational resource. Location-Sensitive Visual Recognit

Discriminative Region Suppression for Weakly-Supervised Semantic Segmentation (AAAI 2021) Official pytorch implementation of our paper: Discriminative

RMNet This repository contains the source code for the paper Efficient Regional Memory Network for Video Object Segmentation. Cite this work @inprocee

MiVOS (CVPR 2021) - Mask Propagation Ho Kei Cheng, Yu-Wing Tai, Chi-Keung Tang [arXiv] [Paper PDF] [Project Page] [Papers with Code] This repo impleme

TorchFlare TorchFlare is a simple, beginner-friendly and an easy-to-use PyTorch Framework train your models without much effort. It provides an almost

MiVOS (CVPR 2021) - Scribble To Mask Ho Kei Cheng, Yu-Wing Tai, Chi-Keung Tang [arXiv] [Paper PDF] [Project Page] A simplistic network that turns scri

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

SNE-RoadSeg Introduction This is the official PyTorch implementation of SNE-RoadSeg: Incorporating Surface Normal Information into Semantic Segmentati

FIERY This is the PyTorch implementation for inference and training of the future prediction bird's-eye view network as described in: FIERY: Future In

LNSNet Overview Official implementation of Learning the Superpixel in a Non-iterative and Lifelong Manner (CVPR'21) Learning Strategy The proposed LNS

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

Implementation for Pixel Consensus Voting (CVPR 2020). This codebase contains the essential ingredients of PCV, including various spatial discretizati