Python 3d-medical-imaging-segmentation Resources

UVO_Challenge Team Alpes_runner Solutions This is an official repo for our UVO Challenge solutions for Image/Video-based open-world segmentation. Our

K-Net: Towards Unified Image Segmentation Introduction This is an official release of the paper K-Net:Towards Unified Image Segmentation. K-Net will a

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

Neural Nano-Optics for High-quality Thin Lens Imaging Project Page | Paper | Data Ethan Tseng, Shane Colburn, James Whitehead, Luocheng Huang, Seung-H

Lidar-Segementation An implementation on "Curved-Voxel Clustering for Accurate Segmentation of 3D LiDAR Point Clouds with Real-Time Performance" from

Non-Imaging Transient Reconstruction And TEmporal Search (NITRATES) This repo contains the full NITRATES pipeline for maximum likelihood-driven discov

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

Dynamic Neural Representational Decoders for High-Resolution Semantic Segmentation Requirements This repository needs mmsegmentation Training To train

Pseudo-mask Matters in Weakly-supervised Semantic Segmentation By Yi Li, Zhanghui Kuang, Liyang Liu, Yimin Chen, Wayne Zhang SenseTime, Tsinghua Unive

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

BMVC 2021 BI-GConv: Boundary-Aware Input-Dependent Graph Convolution for Biomedical Image Segmentation Necassary Dependencies: PyTorch 1.2.0 Python 3.

CRF - Conditional Random Fields A library for dense conditional random fields (CRFs). This is the official accompanying code for the paper Regularized

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

Video Class Agnostic Segmentation [Method Paper] [Benchmark Paper] [Project] [Demo] Official Datasets and Implementation from our Paper "Video Class A

Covid-19 Test AI (Deep Learning - NNs) Software I developed a segmentation algorithm to understand whether Covid-19 Test Photos are positive or negati

Albumentations Albumentations is a Python library for image augmentation. Image augmentation is used in deep learning and computer vision tasks to inc

ngEHTexplorer An interactive tool with which to explore the possible imaging performance of candidate ngEHT architectures. Welcome! ngEHTexplorer is a

Space Time Recurrent Memory Network - Pytorch (wip) Implementation of Space Time Recurrent Memory Network, recurrent network competitive with attentio

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

Semantic Segmentation using UNET This is the implementation of UNET on Carvana Image Masking Kaggle Challenge About the Dataset This dataset contains

Interactive GrabCut An interactive interface for using OpenCV's GrabCut algorithm for image segmentation. Setup Install dependencies: pip install nump

MemSeg: Memory-based semantic segmentation for off-road unstructured natural environments Introduction This repository is a PyTorch implementation of

Semantic Segmentation on MIT ADE20K dataset in PyTorch This is a PyTorch implementation of semantic segmentation models on MIT ADE20K scene parsing da

DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision The PyTorch implementation of DiscoBox: Weakly Supe

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

Multi-Domain Incremental Learning for Semantic Segmentation This is the Pytorch implementation of our work "Multi-Domain Incremental Learning for Sema

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

Alleviating Over-segmentation Errors by Detecting Action Boundaries Forked from ASRF offical code. This repo is the a implementation of replacing orig

Propose-Reduce VIS This repo contains the official implementation for the paper: Video Instance Segmentation with a Propose-Reduce Paradigm Huaijia Li

Dynamic Neural Representational Decoders for High-Resolution Semantic Segmentation Requirements This repository needs mmsegmentation Training To train

Divide-and-Merge-LiDAR-Panoptic-Cluster A demo video of our method with semantic prior: More information will be coming soon! As a PhD student, I don'

Vision Transformer Segmentation Network This implementation of ViT in pytorch uses a super simple and straight-forward way of generating an output of

Python library with Neural Networks for Image Segmentation based on PyTorch. The main features of this library are: High level API (just two lines to

Accelerated DL & RL PyTorch framework for Deep Learning research and development. It was developed with a focus on reproducibility, fast experimentati

Super-BPD for Fast Image Segmentation (CVPR 2020) Introduction We propose direction-based super-BPD, an alternative to superpixel, for fast generic im

MeshCNN in PyTorch SIGGRAPH 2019 [Paper] [Project Page] MeshCNN is a general-purpose deep neural network for 3D triangular meshes, which can be used f

Video Instance Segmentation using Inter-Frame Communication Transformers (NeurIPS 2021) Paper Video Instance Segmentation using Inter-Frame Communicat

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

3DMV 3DMV jointly combines RGB color and geometric information to perform 3D semantic segmentation of RGB-D scans. This work is based on our ECCV'18 p

Kaggle: Cell Instance Segmentation The goal of this challenge is to detect cells in microscope images. with simple view on how many cels have been ann

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Paddle implementation of Dynamic Multi-scale filters for Semantic Segmentation.

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

Hipposeg Hippocampal segmentation using the UNet network for each axis, inspired by https://github.com/MICLab-Unicamp/e2dhipseg Red: False Positive Gr

What is Retentioneering? Retentioneering is a Python framework and library to assist product analysts and marketing analysts as it makes it easier to

SegSwap Pytorch implementation of paper "Learning Co-segmentation by Segment Swapping for Retrieval and Discovery" [PDF] [Project page] If our project

TagLab: an image segmentation tool oriented to marine data analysis TagLab was created to support the activity of annotation and extraction of statist

starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics

SML (ICCV 2021, Oral) : Official Pytorch Implementation This repository provides the official PyTorch implementation of the following paper: Standardi

CoraNet This is the 3D Implementation of 《Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation》 Environment pytor

SML (ICCV 2021, Oral) : Official Pytorch Implementation This repository provides the official PyTorch implementation of the following paper: Standardi

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

Automatic_Background_Remover A Web API for automatic background removal using Deep Learning. App is made using Flask and deployed on Heroku. 👉 https:

Introduction One implementation of the paper "DMRST: A Joint Framework for Document-Level Multilingual RST Discourse Segmentation and Parsing". Users

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

[ICCV 2021] A Simple Baseline for Semi-supervised Semantic Segmentation with Strong Data Augmentation

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o

img2texture Command line utility for converting images to seamless tiles. The resulting tiles can be used as textures in games, compositing and 3D mod

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

Retinal vessel segmentation based on GT-UNet Introduction This project is a retinal blood vessel segmentation code based on UNet-like Group Transforme

ASFormer: Transformer for Action Segmentation This repo provides training & inference code for BMVC 2021 paper: ASFormer: Transformer for Action Segme

ANTsPyNet A collection of deep learning architectures and applications ported to the python language and tools for basic medical image processing. Bas

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

A collection of papers about Transformer in the field of medical image analysis.

Feedback Convolutional Neural Network for Visual Localization and Segmentation The code is an implementation of Feedback Convolutional Neural Network

PointRend A PyTorch implementation of PointRend: Image Segmentation as Rendering [arxiv] [Official Implementation: Detectron2] This repo for Only Sema

Unet network with mean teacher for altrasound image segmentation

Video Object Segmentation(VOS) From Zero to Hero! Goal 1:train a two layers cnn model for vos. Finish! see model.py FFNet for more diteal.(2021.9.30)

Reducing Information Bottleneck for Weakly Supervised Semantic Segmentation (NeurIPS 2021) The implementation of Reducing Infromation Bottleneck for W

LDBE Pytorch implementation for two papers (the paper will be released soon): "Domain Adaptive Semantic Segmentation without Source Data", ACM MM2021.

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

Semi-Supervised Semantic Segmentation via Adaptive Equalization Learning, NeurIPS 2021 (Spotlight) Abstract Due to the limited and even imbalanced dat

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

Reducing Information Bottleneck for Weakly Supervised Semantic Segmentation (NeurIPS 2021) The implementation of Reducing Infromation Bottleneck for W

Semi-Supervised Semantic Segmentation via Adaptive Equalization Learning, NeurIPS 2021 (Spotlight) Abstract Due to the limited and even imbalanced dat

Swin Transformer for Semantic Segmentation of satellite images This repo contains the supported code and configuration files to reproduce semantic seg

CRFConv This repository is the implementation of "Continuous Conditional Random Field Convolution for Point Cloud Segmentation" 1. Setup 1) Building c

DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision Paper | Project page | Demo (Youtube) | Demo (Bilib

Multi-Target Adversarial Frameworks for Domain Adaptation in Semantic Segmentation Paper Multi-Target Adversarial Frameworks for Domain Adaptation in

LoveDA: A Remote Sensing Land-Cover Dataset for Domain Adaptive Semantic Segmentation by Junjue Wang, Zhuo Zheng, Ailong Ma, Xiaoyan Lu, and Yanfei Zh

Mix3D: Out-of-Context Data Augmentation for 3D Scenes (3DV 2021) Alexey Nekrasov*, Jonas Schult*, Or Litany, Bastian Leibe, Francis Engelmann Mix3D is

LIVECell dataset This document contains instructions of how to access the data associated with the submitted manuscript "LIVECell - A large-scale data

Unified-EPT Code for the ICCV 2021 Workshop paper: A Unified Efficient Pyramid Transformer for Semantic Segmentation. Installation Linux, CUDA=10.0,

TorchOk - The toolkit for fast Deep Learning experiments in Computer Vision

basic_cv a basic code repository for basic task in CV(classification,detection,segmentation,tracking) classification generate dataset train predict de

GndNet: Fast Ground plane Estimation and Point Cloud Segmentation for Autonomous Vehicles. Authors: Anshul Paigwar, Ozgur Erkent, David Sierra Gonzale

The Official PyTorch Implementation of DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision

Fast Soft Color Segmentation

Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)

Midgut_oocyst_segmentation Perform oocyst segmentation in mercurochrome stained mosquito midguts This oocyst segmentation model also powers the webtoo

A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp

Deep Multi-Magnification Network This repository provides training and inference codes for Deep Multi-Magnification Network published here. Deep Multi

SurRoL IROS 2021 SurRoL: An Open-source Reinforcement Learning Centered and dVRK Compatible Platform for Surgical Robot Learning Features dVRK compati

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

Transfer-Learn is an open-source and well-documented library for Transfer Learning. It is based on pure PyTorch with high performance and friendly API. Our code is pythonic, and the design is consistent with torchvision. You can easily develop new algorithms, or readily apply existing algorithms.

PFENet This is the implementation of our paper PFENet: Prior Guided Feature Enrichment Network for Few-shot Segmentation that has been accepted to IEE

Unseen Object Amodal Instance Segmentation (UOAIS) Seunghyeok Back, Joosoon Lee, Taewon Kim, Sangjun Noh, Raeyoung Kang, Seongho Bak, Kyoobin Lee This

PyTorch Project Template is being sponsored by the following tool; please help to support us by taking a look and signing up to a free trial PyTorch P

pytorch-fcn PyTorch implementation of Fully Convolutional Networks. Requirements pytorch = 0.2.0 torchvision = 0.1.8 fcn = 6.1.5 Pillow scipy tqdm