Python Scientific-visualization Resources

Hands-on Practice Learning Lab for Data Science Overview This hands on practice lab is a part of Data Visualization with Python course offered by Cour

Optimizers Visualized Visualization of how different optimizers handle mathematical functions for optimization. Contents Installation Usage Functions

FPT_data_centric_competition - Team nan solution repository for FPT data-centric competition. Data augmentation, Albumentation, Mosaic, Visualization, KNN application

torchinfo (formerly torch-summary) Torchinfo provides information complementary to what is provided by print(your_model) in PyTorch, similar to Tensor

opt-einsum-torch There have been many implementations of Einstein's summation. numpy's numpy.einsum is the least efficient one as it only runs in sing

Visualize, analyze, and explore NLP language models. Ecco creates interactive visualizations directly in Jupyter notebooks explaining the behavior of Transformer-based language models (like GPT2, BERT, RoBERTA, T5, and T0).

Datapane Teams | Documentation | API Docs | Changelog | Twitter | Blog Share interactive plots and data in 3 lines of Python. Datapane is a Python lib

PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a

satellite-visualization A cross-platform application to calculate & view the trajectory and live position of any earth-orbiting satellite in 3D. This

World Religion Data Visualization Visualization of the World Religion Data dataset by Correlates of War Project. Mostly personal project to famirializ

Data-FX Data-FX is an addon for Blender (2.9) that allows for the visualization of data with different charts Currently, there are only 2 chart option

Body Model Visualizer Introduction This is a simple Open3D-based GUI for SMPL-family body models. This GUI lets you play with the shape, expression, a

Body Model Visualizer Introduction This is a simple Open3D-based GUI for SMPL-family body models. This GUI lets you play with the shape, expression, a

harold A control systems package for Python=3.6. Introduction This package is written with the ambition of providing a full-fledged control systems s

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

Kotori Telemetry data acquisition and sensor networks for humans. Documentation: https://getkotori.org/ Source Code: https://github.com/daq-tools/koto

Practical Data Visualization with Python Overview All views expressed on this site are my own and do not represent the opinions of any entity with whi

tfgraphviz tfgraphviz is a module to visualize a TensorFlow's data flow graph like TensorBoard using Graphviz. tfgraphviz enables to provide a visuali

Browbeat Browbeat is a performance tuning and analysis tool for OpenStack. Browbeat is free, Open Source software. Analyze and tune your Cloud for opt

OpenQuake Engine The OpenQuake Engine is an open source application that allows users to compute seismic hazard and seismic risk of earthquakes on a g

This repository contains sample code scripts for creating awesome data visualizations from scratch using different python libraries (such as matplotli

discretisedfield Marijan Beg1,2, Martin Lang2, Samuel Holt3, Ryan A. Pepper4, Hans Fangohr2,5,6 1 Department of Earth Science and Engineering, Imperia

HiCBrowser : A simple web browser to visualize Hi-C and other genomic tracks Fidel Ramirez, José Villaveces, Vivek Bhardwaj Installation You can insta

A Boilerplate repo for Scientific Python Open Science projects Installation Clone this repo If you need a fresh python environment, run $ conda env cr

TenSIR Parameter estimation on epidemic data under the SIR model using a novel algorithm for differentiated uniformization of Markov transition rate m

Redash is designed to enable anyone, regardless of the level of technical sophistication, to harness the power of data big and small. SQL users levera

SciPy SciPy (pronounced "Sigh Pie") is an open-source software for mathematics, science, and engineering. It includes modules for statistics, optimiza

Time_Calculator_freeCodeCamp freeCodeCamp Scientific Computing with Python Project for Certification. Write a function named add_time that takes in tw

Polygon_Area_Calculator freeCodeCamp Python Project freeCodeCamp Scientific Computing with Python Project for Certification. In this project you will

Data Explorer Interactively explore your data directly in atom with hydrogen! The nteract data-explorer provides automatic data visualization, so you

Here is some Python code that allows you to read in SVG files and approximate their paths using a Fourier series. The Fourier series can be animated and visualized, the function can be output as a two dimensional vector for Desmos and there is a method to output the coefficients as LaTeX code.

Nebula is an extremely-fast end-to-end interactive big data analytics solution. Nebula is designed as a high-performance columnar data storage and tabular OLAP engine.

Complete system for facial identity system. Include one-shot model, database operation, features visualization, monitoring

Standardized plots and visualizations in Python pltviz is a Python package for standardized visualization. Routine and novel plotting approaches are f

Political elections, appointment, analysis and visualization in Python poli-sci-kit is a Python package for political science appointment and election

Data-viz utils 📈 Functions for data visualization in matplotlib 📚 API Can be installed using pip install dvu and then imported with import dvu. You

About The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficien

Scripted visualizations in blender The goal of this project is to script 3D scientific visualizations using blender. To achieve this, we aim to bring

👀 mols2grid mols2grid is an interactive chemical viewer for 2D structures of small molecules, based on RDKit. ➡️ Try the demo notebook on Google Cola

Notice: Support for Python 3.6 will be dropped in v.0.2.1, please plan accordingly! Efficient and Scalable Physics-Informed Deep Learning Collocation-

NeuralPDE NeuralPDE.jl is a solver package which consists of neural network solvers for partial differential equations using scientific machine learni

Docker Network Graph Visualize the relationship between Docker networks and containers as a neat graphviz graph. Example Usage usage: docker-net-graph

An ipywidgets wrapper of regular-table for Jupyter. Examples Two Billion Rows Notebook Click Events Notebook Edit Events Notebook Styling Notebook Pan

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

Clustergram Visualization and diagnostics for cluster analysis Clustergram is a diagram proposed by Matthias Schonlau in his paper The clustergram: A

Realtime Financial Market Data Visualization and Analysis Introduction This repo shows my project about real-time stock data pipeline. All the code is

The yt Project yt is an open-source, permissively-licensed Python library for analyzing and visualizing volumetric data. yt supports structured, varia

Clustering Clustering Application in Python Using scikit-learn This repository contains the prediction of baseball metric clusters using MLB Statcast

gACSON gACSON software is to visualize, segment, and analyze the morphology of neurons in three-dimensional electron microscopy images. If you use any

H2O Wave Realtime Web Apps and Dashboards for Python and R New! R Language API Build and control Wave dashboards using R! New! Easily integrate AI/ML

Flask JSONDash Easily configurable, chart dashboards from any arbitrary API endpoint. JSON config only. Ready to go. This project is a flask blueprint

Package Description Status PyNHD Navigate and subset NHDPlus (MR and HR) using web services Py3DEP Access topographic data through National Map's 3DEP

charts.css.py charts.css.py provides a python API to convert your 2-dimension data lists into html snippet, which will be rendered into charts by CSS,

Dashboard For The DexConnect Platform of Dexterity Global Working prototype submission for internship at Dexterity Global Group. Dashboard for real ti

COVID-19-Greece A python-generated website for visualizing the novel coronavirus (COVID-19) data for Greece. Data sources Data provided by Johns Hopki

MLVTK A loss surface visualization tool Simple feed-forward network trained on chess data, using elu activation and Adam optimizer Simple feed-forward

apysc apysc is the Python frontend library to create HTML and js files, that has ActionScript 3 (as3)-like interface. Notes: Currently developing and

NumPy is the fundamental package needed for scientific computing with Python. Website: https://www.numpy.org Documentation: https://numpy.org/doc Mail

Vega-Lite Vega-Lite provides a higher-level grammar for visual analysis that generates complete Vega specifications. You can find more details, docume

Gosling.js Gosling.js is a declarative grammar for interactive (epi)genomics visualization on the Web. ⚠️ Please be aware that the grammar of Gosling.

gos is a declarative (epi)genomics visualization library for Python. It is built on top of the Gosling JSON specification, providing a simplified interface for authoring interactive genomic visualizations.

Torch-template-for-deep-learning Pytorch implementations of some **classical backbone CNNs, data enhancement, torch loss, attention, visualization and

An interactive visualization system designed to helps domain experts responsibly edit Generalized Additive Models (GAMs). For more information, check

High-impedance vegetation fault dataset This repository contains the codes that compile the "Vegetation Conduction Ignition Test Report" data, which a

TUEplots Plot-configurations for scientific publications, purely based on matplotlib. Usage Please have a look at the examples in the example/ directo

tf_cnnvis A blog post describing the library: https://medium.com/@falaktheoptimist/want-to-look-inside-your-cnn-we-have-just-the-right-tool-for-you-ad

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

LaTeX Paper Linter This script checks for common mistakes in LaTeX source files of scientific papers. Usage python3 paperlint.py file.tex [-i/x inc

Viz-It Data Visualizer Web-Application If I ask you where most of the data wrangler looses their time ? It is Data Overview and EDA. Presenting "Viz-I

RadarScenes Tools About This python package provides fast visualization for the RadarScenes dataset. The Open GL based visualizer is smoother than ole

plotly_resampler enables visualizing large sequential data by adding resampling functionality to Plotly figures. In this Plotly-Resampler demo over 11

Attractors A small module that provides functions and classes for very efficient simulation and rendering of iterated function systems; dynamical syst

Fast implementation of the MuyGPs Gaussian process hyperparameter estimation algorithm MuyGPs is a GP estimation method that affords fast hyperparamet

Visualization-of-Human3.6M-Dataset Plot and save the ground truth and predicted results of human 3.6 M and CMU mocap dataset. human-motion-prediction

🛰️ Scripts démontrant l'utilisation de l'imagerie RADARSAT-1 à partir d'un seau AWS | 🛰️ Scripts demonstrating the use of RADARSAT-1 imagery from an AWS bucket

🌐 Local Tile Server for Geospatial Rasters Need to visualize a rather large (gigabytes) raster you have locally? This is for you. A Flask application

CNN Explainer An interactive visualization system designed to help non-experts learn about Convolutional Neural Networks (CNNs) For more information,

A Python API for Intelligent Visual Discovery Lux is a Python library that facilitate fast and easy data exploration by automating the visualization a

Delve is a Python package for analyzing the inference dynamics of your PyTorch model.

Impyute is a library of missing data imputation algorithms. This library was designed to be super lightweight, here's a sneak peak at what impyute can do.

PyEMD: Fast EMD for Python PyEMD is a Python wrapper for Ofir Pele and Michael Werman's implementation of the Earth Mover's Distance that allows it to

Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization

tensorboardX Write TensorBoard events with simple function call. The current release (v2.3) is tested on anaconda3, with PyTorch 1.8.1 / torchvision 0

FFT-accelerated Interpolation-based t-SNE (FIt-SNE) Introduction t-Stochastic Neighborhood Embedding (t-SNE) is a highly successful method for dimensi

Code for an interactive UMAP visualization of the MNIST data set. Demo at https://grantcuster.github.io/umap-explorer/. You can read more about the de

livelossplot Don't train deep learning models blindfolded! Be impatient and look at each epoch of your training! (RECENT CHANGES, EXAMPLES IN COLAB, A

Visualization of the Austrian Monuments Visualization of the monument landscape of the austrian monuments registry (Bundesdenkmalamt Denkmalverzeichni

Penrose Penrose is an early-stage system that is still in development. Our system is not ready for contributions or public use yet, but hopefully will

Bokeh-Python-Visualization A Bokeh project developed for learning and teaching Bokeh interactive plotting! See my medium blog posts about making bokeh

dtreeviz : Decision Tree Visualization Description A python library for decision tree visualization and model interpretation. Currently supports sciki

Software Galaxies This repository combines visualizations of major software package managers. All visualizations are available here: http://anvaka.git

About Plotting millions of points can be slow. Real slow... 😴 So why not use density maps? ⚡ The mpl-scatter-density mini-package provides functional

Colorcet: Collection of perceptually uniform colormaps Build Status Coverage Latest dev release Latest release Docs What is it? Colorcet is a collecti

Welcome to Streamlit 👋 The fastest way to build and share data apps. Streamlit lets you turn data scripts into sharable web apps in minutes, not week

Scikit-Garden or skgarden (pronounced as skarden) is a garden for Scikit-Learn compatible decision trees and forests.

Nuance I use Nuance to curate varied visualization thoughts during my data scientist career. It is not yet a package but a list of small ideas. Welcom

pyLDAvis Python library for interactive topic model visualization. This is a port of the fabulous R package by Carson Sievert and Kenny Shirley. pyLDA

🌐 Local Tile Server for Geospatial Rasters Need to visualize a rather large raster (gigabytes) you have locally? This is for you. A Flask application

UNAVOIDS: Unsupervised and Nonparametric Approach for Visualizing Outliers and Invariant Detection Scoring Code Summary aggregate.py: this script aggr

Overview of OpenPNM OpenPNM is a comprehensive framework for performing pore network simulations of porous materials. More Information For more detail