Python Protein-visualization Resources

This is a simple one that uses Grafina to visualize cryptocurrency from the Bitkub exchange. This service will make a request to the Bitkub API from your wallet and save the response to Postgresql. Grafina will retrieve data from Postgresql and display the graph.

Visualization of numerical optimization algorithms

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

A multi-platform GUI for bit-based analysis, processing, and visualization

Render tokei's output to interactive sunburst chart.

Pebble is a stat's visualization tool, this will provide a skeleton to develop a monitoring tool.

QuantStats: Portfolio analytics for quants QuantStats Python library that performs portfolio profiling, allowing quants and portfolio managers to unde

partial_dependence A python library for plotting partial dependence patterns of machine learning classifiers. The technique is a black box approach to

moDel Agnostic Language for Exploration and eXplanation Overview Unverified black box model is the path to the failure. Opaqueness leads to distrust.

An open access book on scientific visualization using python and matplotlib

Quiver Interactive convnet features visualization for Keras The quiver workflow Video Demo Build your model in keras model = Model(...) Launch the vis

VizTracer is a low-overhead logging/debugging/profiling tool that can trace and visualize your python code execution.

pytools is an open source library containing general machine learning and visualisation utilities for reuse, including: Basic tools for API developmen

Brain-Image-Segmentation Segmentation of brain tissues in MRI image has a number of applications in diagnosis, surgical planning, and treatment of bra

Daily social mapping project in November 2021. Maps made using PyGMT whenever possible.

CanvasXpress Python Library About CanvasXpress for Python CanvasXpress was developed as the core visualization component for bioinformatics and system

This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.

Introduction orfipy is a tool written in python/cython to extract ORFs in an extremely and fast and flexible manner. Other popular ORF searching tools

Simple-Data-Visualization A simple project on Data Visualization for CSCI-40 course - the instructions can be found here SAT results in New York in 20

ecoglib: visualization and statistics for high density microecog signals This library contains high-level analysis tools for "topos" and "chronos" asp

Exploring aircraft accidents in Brazil Occurrencies with aircraft in Brazil are investigated by the Center for Investigation and Prevention of Aircraf

Rater Scoring Modeling Tool Introduction Automated scoring of written and spoken test responses is a growing field in educational natural language pro

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

Explore RNA-Protein interactions. RNPFind is a bioinformatics tool. It takes an RNA transcript as input and gives a list of RNA binding protein (RBP)

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

This repository contains a number of convolutional neural network visualization techniques implemented in PyTorch.

LMdiff Qualitative comparison of large language models. Demo & Paper: http://lmdiff.net LMdiff is a MIT-IBM Watson AI Lab collaboration between: Hendr

MPL Plotter is a Matplotlib based Python plotting library built with the goal of delivering publication-quality plots concisely.

A lightweight and powerful python module for scientific analysis and visualization of 3d objects.

Visualization Data Drug in thailand during 2014 to 2020 Data sorce from ข้อมูลเปิดภาครัฐ สำนักงาน ป.ป.ส Inttroducing program Using tkinter module for

MINT (Metabolomics Integrator) The Metabolomics Integrator (MINT) is a post-processing tool for liquid chromatography-mass spectrometry (LCMS) based m

duality Data science, Data manipulation and Machine learning package. Use permitted according to the terms of use and conditions set by the attached l

Auto-ML tool specialized in detecting of outliers Description This tool will allows you, with a Dash visualization, to compare 10 models of machine le

Book on Julia for Data Science

dbv Decision Border Visualizer for Classification Algorithms Project description A python package for Machine Learning Engineers who want to visualize

PerfPlotter Read data from CSV files using pandas and generate interactive plots using bokeh, which can then be embedded into HTML pages and served by

What is liGAN? liGAN is a research codebase for training and evaluating deep generative models for de novo drug design based on 3D atomic density grid

Datenvisualisierung-Elektromagnetischen-Spektrum Anhand des Moduls matplotlib sollen die Daten des elektromagnetischen Spektrums dargestellt werden. D

Predicting lncRNA–protein interactions based on graph autoencoders and collaborative training Code for our paper "Predicting lncRNA–protein interactio

Homework 2: Matplotlib and Data Visualization Overview These data visualizations were created for my introductory computer science course using Python

EarthGAN - Earth Mantle Surrogate Modeling Can a surrogate model of the Earth’s Mantle Convection data set be built such that it can be readily run in

Data visualization using matplotlib project instructions Top 5 Most Common Coffee Origins In this visualization I used data from Ankur Chavda on Kaggl

Rick and Morty Data Visualization For this project I looked at data for the TV show Rick and Morty Number of Episodes at a Certain Location Here is th

Data Trump's Tweeted Words This plot illustrates twitter word occurences. We already did the coding I needed for this plot, so I was very inspired to

China and India Population and GDP Visualization Historical Population Comparison between India and China This graph shows the population data of Indi

geospatial-data-analysis [readme] Use this code in your Python IDE or notebook to generate a basic Kepler.gl data visualization, without pre-configura

Visualizing Technical Indicators Using Python and Plotly. Currently facing issues hosting the application on heroku. As soon as I am able to I'll like

libreMind Meditation exercises What is it? LibreMind is a free meditation app made in under 24 hours. It has various meditation, breathwork, and visua

3D detection and tracking viewer (visualization) for kitti & waymo dataset

Sorting-Visualizer This is a sorting visualizer made with Tkinter. Make sure you've installed tkinter in your system to use this visualizer pip instal

JittorVis: Visual understanding of deep learning model JittorVis is an open-source library for understanding the inner workings of Jittor models by vi

chitra What is chitra? chitra (चित्र) is a multi-functional library for full-stack Deep Learning. It simplifies Model Building, API development, and M

peptides.py Physicochemical properties and indices for amino-acid sequences. 🗺️ Overview peptides.py is a pure-Python package to compute common descr

Simple-Classifier This is a basic example of how to use several different libraries for classification and ensembling, mostly with sklearn. Example as

QuakeLabeler Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently bu

What is Retentioneering? Retentioneering is a Python framework and library to assist product analysts and marketing analysts as it makes it easier to

seaborn-image: image data visualization Description Seaborn-image is a Python image visualization library based on matplotlib and provides a high-leve

Robotic Arm Simulation in ROS2 and Gazebo General Overview This repository includes: First, how to simulate a 6DoF Robotic Arm from scratch using GAZE

Missing Pixel Filler This is the official code repository for the Missing Pixel Filler by SpaceML. missing-pixel-filler is a python package that, give

QQuickSort A simple GUI visualization of QuickSort algorithm. It only uses PySide6, it does not have any other external dependency. How to run Install

PoseViz – 3D Human Pose Visualizer Multi-person, multi-camera 3D human pose visualization tool built using Mayavi. As used in MeTRAbs visualizations.

Glue Glue is a python project to link visualizations of scientific datasets across many files. Click on the image for a quick demo: Features Interacti

Economics Observatory Visualisation Repository Website | Visualisations | Data | Here you will find all the data visualisations and infographics attac

Sorting Algorithm Visualizer A gui application to visualize various sorting algorithms using pure python. Language : Python 3 Libraries required Tkint

HUMAN4D: A Human-Centric Multimodal Dataset for Motions & Immersive Media HUMAN4D constitutes a large and multimodal 4D dataset that contains a variet

A data visualization curriculum of interactive notebooks, using Vega-Lite and Altair. This repository contains a series of Python-based Jupyter notebooks.

Pathfinding-Visualizer 🚀 A visualization tool made in Pygame for various pathfinding algorithms. Pathfinding is closely related to the shortest path

Web Scrapping Popular Youtube Tech Channels with Selenium Data Mining, Data Wrangling, and Exploratory Data Analysis About the Data Web scrapi

HyperSpy is an open source Python library for the interactive analysis of multidimensional datasets that can be described as multidimensional arrays o

TRAnsformer Routing Networks (TRAR) This is an official implementation for ICCV 2021 paper "TRAR: Routing the Attention Spans in Transformers for Visu

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A ultra-lightweight 3D renderer of the Tensorflow/Keras neural network architectures

Reporting and Visualization for Hazardous Events

GNNLens2 is an interactive visualization tool for graph neural networks (GNN).

Rover - Terraform Visualizer Rover is a Terraform visualizer. In order to do this, Rover: generates a plan file and parses the configuration in the ro

Dream-Creator This project aims to simplify the process of creating a custom DeepDream model by using pretrained GoogleNet models and custom image dat

FlashTorch A Python visualization toolkit, built with PyTorch, for neural networks in PyTorch. Neural networks are often described as "black box". The

neural-dream This is a PyTorch implementation of DeepDream. The code is based on neural-style-pt. Here we DeepDream a photograph of the Golden Gate Br

Convolutional Neural Network Visualizations This repository contains a number of convolutional neural network visualization techniques implemented in

Website, Tutorials, and Docs    Uncertainty Toolbox A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualizatio

SpecViewer A simple visualization tool for astronomers. Dependencies Python = 3.7.4 PyQt5 = 5.15.4 pyqtgraph == 0.10.0 numpy = 1.19.4 How to use py

Structured Self-attentive sentence embeddings Implementation for the paper A Structured Self-Attentive Sentence Embedding, which was published in ICLR

VIN: Value Iteration Networks This is an implementation of Value Iteration Networks (VIN) in PyTorch to reproduce the results.(TensorFlow version) Key

RGN2-Replica (WIP) To eventually become an unofficial working Pytorch implementation of RGN2, an state of the art model for MSA-less Protein Folding f

NeRF visualization library using PlenOctrees, under construction pip install nerfvis Docs will be at: https://nerfvis.readthedocs.org import nerfvis s

Point Cloud ToolBox This point cloud processing tool library can be used to process point clouds, 3d meshes, and voxels. Environment python 3.7.5 Dep

Python Mini Projects A collection of easy Python small projects to help you improve your programming skills. Table Of Contents Aim Of The Project Cont

DecisionTree 决策树分类与回归模型，以及可视化 DecisionTree ID3 C4.5 CART 分类 回归 决策树绘制 分类树 回归树 调参 剪枝 ID3 ID3决策树是最朴素的决策树分类器： 无剪枝 只支持离散属性 采用信息增益准则 在data.py中，我们记录了一个小的西瓜数据

Twitter-Map This software allows the user to create maps of Twitter accounts. Installation git clone [email protected]:OGreenwood672/Twitter-Map.git cd T

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

PyTorch implementation of Interpretable Explanations of Black Boxes by Meaningful Perturbation The paper: https://arxiv.org/abs/1704.03296 What makes

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Evidence enables analysts to deliver a polished business intelligence system using SQL and markdown

MoVi-Toolbox Data Preparation, Processing, and Visualization for MoVi Data, https://www.biomotionlab.ca/movi/ MoVi is a large multipurpose dataset of

Neural network visualization toolkit for tf.keras

Structured Self-attentive sentence embeddings Implementation for the paper A Structured Self-Attentive Sentence Embedding, which was published in ICLR

attractors Attractors is a package for simulation and visualization of strange attractors. Installation The simplest way to install the module is via

Triangle Multiplicative Module - Pytorch Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or c

Transparency-by-Design networks (TbD-nets) This repository contains code for replicating the experiments and visualizations from the paper Transparenc